Control of cell cycle transcription during G1 and S phases

C Bertoli, JM Skotheim, RAM De Bruin - Nature reviews Molecular cell …, 2013 - nature.com
The accurate transition from G1 phase of the cell cycle to S phase is crucial for the control of
eukaryotic cell proliferation, and its misregulation promotes oncogenesis. During G1 phase …

Topology and control of the cell-cycle-regulated transcriptional circuitry

SB Haase, C Wittenberg - Genetics, 2014 - academic.oup.com
Nearly 20% of the budding yeast genome is transcribed periodically during the cell division
cycle. The precise temporal execution of this large transcriptional program is controlled by a …

Feedback loops and reciprocal regulation: recurring motifs in the systems biology of the cell cycle

JE Ferrell Jr - Current opinion in cell biology, 2013 - Elsevier
Highlights•Recurring motifs are found in eukaryotic cell cycle regulation.•These include
positive and negative feedbacks and reciprocal regulation.•We review examples of all of …

Linking DNA replication checkpoint to MBF cell‐cycle transcription reveals a distinct class of G1/S genes

FM Bastos de Oliveira, MR Harris, P Brazauskas… - The EMBO …, 2012 - embopress.org
Reprogramming gene expression is crucial for DNA replication stress response. We used
quantitative proteomics to establish how the transcriptional response results in changes in …

Comprehensive proteomics analysis reveals new substrates and regulators of the fission yeast clp1/cdc14 phosphatase

JS Chen, MR Broadus, JR McLean… - Molecular & Cellular …, 2013 - ASBMB
The conserved family of Cdc14 phosphatases targets cyclin-dependent kinase substrates in
yeast, mediating late mitotic signaling events. To discover substrates and regulators of the …

Consensus clustering for Bayesian mixture models

S Coleman, PDW Kirk, C Wallace - BMC bioinformatics, 2022 - Springer
Background Cluster analysis is an integral part of precision medicine and systems biology,
used to define groups of patients or biomolecules. Consensus clustering is an ensemble …

Global coordination of transcriptional control and mRNA decay during cellular differentiation

MJ Amorim, C Cotobal, C Duncan… - Molecular systems …, 2010 - embopress.org
The function of transcription in dynamic gene expression programs has been extensively
studied, but little is known about how it is integrated with RNA turnover at the genome‐wide …

Recent insights into mechanisms preventing ectopic centromere formation

Q Dong, J Yang, J Gao, F Li - Open Biology, 2021 - royalsocietypublishing.org
The centromere is a specialized chromosomal structure essential for chromosome
segregation. Centromere dysfunction leads to chromosome segregation errors and genome …

Deciphering the Transcriptional-Regulatory Network of Flocculation in Schizosaccharomyces pombe

EJG Kwon, A Laderoute, K Chatfield-Reed… - PLoS …, 2012 - journals.plos.org
In the fission yeast Schizosaccharomyces pombe, the transcriptional-regulatory network that
governs flocculation remains poorly understood. Here, we systematically screened an array …

Yox1 links MBF‐dependent transcription to completion of DNA synthesis

B Gómez‐Escoda, T Ivanova, IA Calvo… - EMBO …, 2011 - embopress.org
When DNA replication is challenged cells activate a DNA synthesis checkpoint, blocking cell
cycle progression until they are able to overcome the replication defects. In fission yeast …