The diversification of methods for studying cell–cell interactions and communication

E Armingol, HM Baghdassarian, NE Lewis - Nature Reviews Genetics, 2024 - nature.com
No cell lives in a vacuum, and the molecular interactions between cells define most
phenotypes. Transcriptomics provides rich information to infer cell–cell interactions and …

Beyond genetics: driving cancer with the tumour microenvironment behind the wheel

S Yuan, J Almagro, E Fuchs - Nature Reviews Cancer, 2024 - nature.com
Cancer has long been viewed as a genetic disease of cumulative mutations. This notion is
fuelled by studies showing that ageing tissues are often riddled with clones of complex …

IL-1β+ macrophages fuel pathogenic inflammation in pancreatic cancer

N Caronni, F La Terza, FM Vittoria, G Barbiera… - Nature, 2023 - nature.com
Pancreatic ductal adenocarcinoma (PDAC) is a lethal disease with high resistance to
therapies. Inflammatory and immunomodulatory signals co-exist in the pancreatic tumour …

A review of single-cell RNA-Seq annotation, integration, and cell–cell communication

C Cheng, W Chen, H Jin, X Chen - Cells, 2023 - mdpi.com
Single-cell RNA sequencing (scRNA-seq) has emerged as a powerful tool for investigating
cellular biology at an unprecedented resolution, enabling the characterization of cellular …

Reactivation of embryonic genetic programs in tissue regeneration and disease

H Fazilaty, K Basler - Nature Genetics, 2023 - nature.com
Embryonic genetic programs are reactivated in response to various types of tissue damage,
providing cell plasticity for tissue regeneration or disease progression. In acute conditions …

Computational cell–cell interaction technologies drive mechanistic and biomarker discovery in the tumor microenvironment

A Pong, CK Mah, GW Yeo, NE Lewis - Current Opinion in Biotechnology, 2024 - Elsevier
Highlights•Tumor-immune CCIs can be investigated using scRNA-seq and ST
strategies.•CCI studies elucidate fundamental mechanisms in disease state.•Open-source …

Epigenetic control of pancreatic cancer metastasis

L Krauß, C Schneider, E Hessmann, D Saur… - Cancer and Metastasis …, 2023 - Springer
Surgical resection, when combined with chemotherapy, has been shown to significantly
improve the survival rate of patients with pancreatic ductal adenocarcinoma (PDAC) …

Quantifying cell-state densities in single-cell phenotypic landscapes using Mellon

DJ Otto, C Jordan, B Dury, C Dien, M Setty - Nature Methods, 2024 - nature.com
Cell-state density characterizes the distribution of cells along phenotypic landscapes and is
crucial for unraveling the mechanisms that drive diverse biological processes. Here, we …

Oncogenic KRAS-dependent stromal interleukin-33 directs the pancreatic microenvironment to promote tumor growth

KL Donahue, HR Watkoske, P Kadiyala, W Du… - Cancer …, 2024 - aacrjournals.org
Pancreatic cancer is characterized by an extensive fibroinflammatory microenvironment.
During carcinogenesis, normal stromal cells are converted to cytokine-high cancer …

Emerging prognostic and predictive factors in pancreatic cancer

E Karamitopoulou - Modern Pathology, 2023 - Elsevier
Pancreatic cancer is a lethal disease with increasing incidence and high recurrence rates,
currently resistant to conventional therapies. Moreover, it displays extensive morphological …