[HTML][HTML] Data-analysis strategies for image-based cell profiling

JC Caicedo, S Cooper, F Heigwer, S Warchal, P Qiu… - Nature …, 2017 - nature.com
Image-based cell profiling is a high-throughput strategy for the quantification of phenotypic
differences among a variety of cell populations. It paves the way to studying biological …

[HTML][HTML] A bird's-eye view of deep learning in bioimage analysis

E Meijering - Computational and structural biotechnology journal, 2020 - Elsevier
Deep learning of artificial neural networks has become the de facto standard approach to
solving data analysis problems in virtually all fields of science and engineering. Also in …

[HTML][HTML] Deep learning for digital pathology image analysis: A comprehensive tutorial with selected use cases

A Janowczyk, A Madabhushi - Journal of pathology informatics, 2016 - Elsevier
Background: Deep learning (DL) is a representation learning approach ideally suited for
image analysis challenges in digital pathology (DP). The variety of image analysis tasks in …

Rapid intraoperative histology of unprocessed surgical specimens via fibre-laser-based stimulated Raman scattering microscopy

DA Orringer, B Pandian, YS Niknafs… - Nature biomedical …, 2017 - nature.com
Conventional methods for intraoperative histopathologic diagnosis are labour-and time-
intensive, and may delay decision-making during brain-tumour surgery. Stimulated Raman …

Rotation-invariant convolutional neural networks for galaxy morphology prediction

S Dieleman, KW Willett, J Dambre - Monthly notices of the royal …, 2015 - academic.oup.com
Measuring the morphological parameters of galaxies is a key requirement for studying their
formation and evolution. Surveys such as the Sloan Digital Sky Survey have resulted in the …

Quantifying radiographic knee osteoarthritis severity using deep convolutional neural networks

J Antony, K McGuinness, NE O'Connor… - … conference on pattern …, 2016 - ieeexplore.ieee.org
This paper proposes a new approach to automatically quantify the severity of knee
osteoarthritis (OA) from radiographs using deep convolutional neural networks (CNN) …

Shape and texture indexes application to cell nuclei classification

G Thibault, B Fertil, C Navarro, S Pereira… - … Journal of Pattern …, 2013 - World Scientific
This paper describes the sequence of construction of a cell nuclei classification model by the
analysis, the characterization and the classification of shape and texture. We describe first …

Image Data Resource: a bioimage data integration and publication platform

E Williams, J Moore, SW Li, G Rustici, A Tarkowska… - Nature …, 2017 - nature.com
Access to primary research data is vital for the advancement of science. To extend the data
types supported by community repositories, we built a prototype Image Data Resource …

Histology image analysis for carcinoma detection and grading

L He, LR Long, S Antani, GR Thoma - Computer methods and programs in …, 2012 - Elsevier
This paper presents an overview of the image analysis techniques in the domain of
histopathology, specifically, for the objective of automated carcinoma detection and …

Detection and classification of cancer from microscopic biopsy images using clinically significant and biologically interpretable features

R Kumar, R Srivastava… - Journal of medical …, 2015 - Wiley Online Library
A framework for automated detection and classification of cancer from microscopic biopsy
images using clinically significant and biologically interpretable features is proposed and …