Interactions of small molecules with DNA junctions

KT McQuaid, A Pipier, CJ Cardin… - Nucleic Acids …, 2022 - academic.oup.com
The four natural DNA bases (A, T, G and C) associate in base pairs (A= T and G≡ C),
allowing the attached DNA strands to assemble into the canonical double helix of DNA (or …

Cre recombinase and other tyrosine recombinases

G Meinke, A Bohm, J Hauber, MT Pisabarro… - Chemical …, 2016 - ACS Publications
Tyrosine-type site-specific recombinases (T-SSRs) have opened new avenues for the
predictable modification of genomes as they enable precise genome editing in heterologous …

Cre recombinase

GD Van Duyne - Mobile DNA III, 2015 - Wiley Online Library
The use of Cre recombinase to carry out conditional mutagenesis of transgenes and insert
DNA cassettes into eukaryotic chromosomes is widespread (1–9). Indeed, a PubMed search …

[HTML][HTML] Dynamics in Cre-loxP site-specific recombination

MP Foster, MJ Benedek, TD Billings… - Current opinion in …, 2024 - Elsevier
Cre recombinase is a phage-derived enzyme that has found utility for precise manipulation
of DNA sequences. Cre recognizes and recombines pairs of loxP sequences characterized …

[HTML][HTML] Junctions in DNA: underexplored targets for therapeutic intervention

E Ivens, MMD Cominetti, M Searcey - Bioorganic & Medicinal Chemistry, 2022 - Elsevier
DNA has been a key target for cancer therapy, with a range of compounds able to bind and
either impair its processing or induce damage. Targeting DNA with small molecules in a truly …

DNA folds threaten genetic stability and can be leveraged for chemotherapy

J Zell, FR Sperti, S Britton, D Monchaud - RSC Chemical Biology, 2021 - pubs.rsc.org
Damaging DNA is a current and efficient strategy to fight against cancer cell proliferation.
Numerous mechanisms exist to counteract DNA damage, collectively referred to as the DNA …

Organometallic pillarplexes that bind DNA 4-way Holliday junctions and forks

JS Craig, L Melidis, HD Williams… - Journal of the …, 2023 - ACS Publications
Holliday 4-way junctions are key to important biological DNA processes (insertion,
recombination, and repair) and are dynamic structures that adopt either open or closed …

Induced-fit docking studies of the active and inactive states of protein tyrosine kinases

H Zhong, LM Tran, JL Stang - Journal of Molecular Graphics and Modelling, 2009 - Elsevier
Inhibition of tyrosine kinases (such as the epidermal growth factor receptor, EGFR, and/or
Abelson leukemia virus protein kinase, ABL) represents a major advancement in the …

The λ integrase site‐specific recombination pathway

A Landy - Mobile DNA III, 2015 - Wiley Online Library
The λ site‐specific recombination pathway has enjoyed the sequential attentions of
geneticists, biochemists, and structural biologists for more than 50 years. It has proven to be …

An overview of tyrosine site‐specific recombination: from an Flp perspective

M Jayaram, CH Ma, AH Kachroo, PA Rowley… - Mobile DNA …, 2015 - Wiley Online Library
Tyrosine family site‐specific recombinases (YRs), named after the active site tyrosine
nucleophile they utilize for DNA strand breakage, are widely distributed among prokaryotes …