Scaling up: A guide to high‐throughput genomic approaches for biodiversity analysis

TM Porter, M Hajibabaei - Molecular ecology, 2018 - Wiley Online Library
The purpose of this review is to present the most common and emerging DNA‐based
methods used to generate data for biodiversity and biomonitoring studies. As environmental …

Sequencing our way towards understanding global eukaryotic biodiversity

HM Bik, DL Porazinska, S Creer, JG Caporaso… - Trends in ecology & …, 2012 - cell.com
Microscopic eukaryotes are abundant, diverse and fill critical ecological roles across every
ecosystem on Earth, yet there is a well-recognized gap in understanding of their global …

SPREAD: spatial phylogenetic reconstruction of evolutionary dynamics

F Bielejec, A Rambaut, MA Suchard, P Lemey - Bioinformatics, 2011 - academic.oup.com
SPREAD is a user-friendly, cross-platform application to analyze and visualize Bayesian
phylogeographic reconstructions incorporating spatial–temporal diffusion. The software …

[HTML][HTML] Visualization and analytics tools for infectious disease epidemiology: a systematic review

LN Carroll, AP Au, LT Detwiler, T Fu, IS Painter… - Journal of biomedical …, 2014 - Elsevier
Background A myriad of new tools and algorithms have been developed to help public
health professionals analyze and visualize the complex data used in infectious disease …

New World cattle show ancestry from multiple independent domestication events

EJ McTavish, JE Decker… - Proceedings of the …, 2013 - National Acad Sciences
Previous archeological and genetic research has shown that modern cattle breeds are
descended from multiple independent domestication events of the wild aurochs (Bos …

Integrating statistical genetic and geospatial methods brings new power to phylogeography

LM Chan, JL Brown, AD Yoder - Molecular phylogenetics and evolution, 2011 - Elsevier
The field of phylogeography continues to grow in terms of power and accessibility. Initially
uniting population genetics and phylogenetics, it now spans disciplines as diverse as …

Visualization of biomedical data

SI O'Donoghue, BF Baldi, SJ Clark… - Annual Review of …, 2018 - annualreviews.org
The rapid increase in volume and complexity of biomedical data requires changes in
research, communication, and clinical practices. This includes learning how to effectively …

Northern range expansion of European populations of the wasp spider Argiope bruennichi is associated with global warming–correlated genetic admixture and …

H Krehenwinkel, D Tautz - Molecular ecology, 2013 - Wiley Online Library
Poleward range expansions are observed for an increasing number of species, which may
be an effect of global warming during the past decades. However, it is still not clear in how …

GenGIS 2: geospatial analysis of traditional and genetic biodiversity, with new gradient algorithms and an extensible plugin framework

DH Parks, T Mankowski, S Zangooei, MS Porter… - PloS one, 2013 - journals.plos.org
GenGIS is free and open source software designed to integrate biodiversity data with a
digital map and information about geography and habitat. While originally developed with …

[PDF][PDF] A Survey of Multi-faceted Graph Visualization.

S Hadlak, H Schumann, HJ Schulz - EuroVis (STARs), 2015 - researchgate.net
Graph visualization is an important field in information visualization that is centered on the
graphical display of graph-structured data. Yet real world data is rarely just graph-structured …