In situ nucleic acid sequencing of expanded biological samples

ES Boyden, F Chen, S Alon, G Church… - US Patent …, 2018 - Google Patents
The invention provides in situ nucleic acid sequencing to be conducted in biological
specimens that have been physically expanded. The invention leverages the techniques for …

Nucleic acid sequencing

T Hauling, M Kühnemund - US Patent 11,352,667, 2022 - Google Patents
A nucleic acid sequencing method involving contacting a spatially defined target nucleic
acid sequence with N labeled oligonucleotide probes and performing measurements, at …

Spatially distinguished, multiplex nucleic acid analysis of biological specimens

J Frisen, P Stahl, J Lundeberg, GM Cann… - US Patent …, 2022 - Google Patents
A method for spatially tagging nucleic acids of a biological specimen, including steps of (a)
providing a solid support comprising different nucleic acid probes that are randomly located …

Multiplexed signal amplified FISH via splinted ligation amplification and sequencing

F Chen, AT Wassie, S Alon, AH Marblestone… - US Patent …, 2021 - Google Patents
The present invention relates to a method for amplifying at least one target RNA in a fixed
and, optionally, expanded biological sample. In an embodiment of the invention, the method …

Protein retention expansion microscopy

PW Tillberg, F Chen, ES Boyden… - US Patent …, 2019 - Google Patents
The invention provides a method termed protein retention ExM (proExM), in which proteins,
rather than labels, are anchored to the swellable gel, using a cross-linking molecule. This …

Iterative expansion microscopy

ES Boyden, JB Chang, F Chen, PW Tillberg - US Patent 11,408,890, 2022 - Google Patents
The present invention leverages the techniques for expansion microscopy (ExM) to provide
improved high-throughput super-resolution whole-organ imaging methodology to image …

Methods for preparing high-resolution spatial arrays

FA Bava - US Patent 12,110,541, 2024 - Google Patents
Provided herein are methods of preparing a spatial array and methods for associating
specific sample analytes with spatial locations in the spatial array. Provided herein are …

In situ ATAC sequencing

F Chen, AC Payne, JD Buenrostro, P Reginato… - US Patent …, 2021 - Google Patents
The present invention provides methods for analyzing polynucleotides such as genomic
DNA. In some embodiments, the disclosure provides a method for preparing and amplifying …

Methods and compositions for partitioning a biological sample

FA Bava - US Patent 11,835,462, 2023 - Google Patents
US11835462B2 - Methods and compositions for partitioning a biological sample - Google
Patents US11835462B2 - Methods and compositions for partitioning a biological sample …

Increasing efficiency of spatial analysis in a biological sample

FA Bava - US Patent 11,732,300, 2023 - Google Patents
Disclosed herein are methods of amplifying an analyte in a biological sample using a
bridging oligonucleotide that hybridizes to a captured analyte. The methods disclosed …