Massively parallel sample preparation for multiplexed single-cell proteomics using nPOP

A Leduc, L Khoury, J Cantlon, S Khan, N Slavov - Nature protocols, 2024 - nature.com
Single-cell proteomics by mass spectrometry (MS) allows the quantification of proteins with
high specificity and sensitivity. To increase its throughput, we developed nano-proteomic …

Data-independent acquisition shortens the analytical window of single-cell proteomics to fifteen minutes in capillary electrophoresis mass spectrometry

B Shen, LR Pade, P Nemes - Journal of Proteome Research, 2024 - ACS Publications
Separation in single-cell mass spectrometry (MS) improves molecular coverage and
quantification; however, it also elongates measurements, thus limiting analytical throughput …

Next-Generation Cancer Phenomics: A Transformative Approach to Unraveling Lung Cancer Complexity and Advancing Precision Medicine

S Dasgupta - OMICS: A Journal of Integrative Biology, 2024 - liebertpub.com
Lung cancer remains one of the leading causes of cancer-related deaths globally, with its
complexity driven by intricate and intertwined genetic, epigenetic, and environmental factors …

Single-cell proteomics of Arabidopsis leaf mesophyll identifies drought stress-related proteins

JM Fulcher, P Dawar, VK Balasubramanian… - BioRxiv, 2024 - biorxiv.org
The application of single-cell omics tools to biological systems can provide unique insights
into diverse cellular populations and their heterogeneous responses to internal and external …

DESP demixes cell-state profiles from dynamic bulk molecular measurements

A Youssef, I Paul, M Crovella, A Emili - Cell Reports Methods, 2024 - cell.com
Understanding the dynamic expression of proteins and other key molecules driving
phenotypic remodeling in development and pathobiology has garnered widespread interest …

[HTML][HTML] Inferring post-transcriptional regulation within and across cell types in human testis

S Khan, M Elcheikhali, A Leduc, RG Huffman… - …, 2024 - pmc.ncbi.nlm.nih.gov
Single-cell tissue atlases commonly use RNA abundances as surrogates for protein
abundances. Yet, protein abundance also depends on the regulation of protein synthesis …

Single-Cell Proteomic and Transcriptomic Characterization of Drug-Resistant Prostate Cancer Cells Reveals Molecular Signatures Associated with Morphological …

J Woo, M Loycano, M Amanullah, J Qian, S Amend… - bioRxiv, 2024 - biorxiv.org
This study delves into the proteomic intricacies of drug-resistant cells (DRCs) within prostate
cancer, which are known for their pivotal roles in therapeutic resistance, relapse, and …

The current economics and throughput of single cell proteomics by liquid chromatography mass spectrometry

A Smythers, B Orsburn - 2024 - chemrxiv.org
Single cell proteomics by mass spectrometry (SCP) is an emerging field of study that has
captured the interest and imagination of biologists in a wide array of disciplines. In the …