Metagenomics-a guide from sampling to data analysis

T Thomas, J Gilbert, F Meyer - Microbial informatics and experimentation, 2012 - Springer
Metagenomics applies a suite of genomic technologies and bioinformatics tools to directly
access the genetic content of entire communities of organisms. The field of metagenomics …

Key players and team play: anaerobic microbial communities in hydrocarbon-contaminated aquifers

S Kleinsteuber, KM Schleinitz, C Vogt - Applied microbiology and …, 2012 - Springer
Biodegradation of anthropogenic pollutants in shallow aquifers is an important microbial
ecosystem service which is mainly brought about by indigenous anaerobic microorganisms …

Architecture and evolution of a minute plant genome

E Ibarra-Laclette, E Lyons, G Hernández-Guzmán… - Nature, 2013 - nature.com
It has been argued that the evolution of plant genome size is principally unidirectional and
increasing owing to the varied action of whole-genome duplications (WGDs) and mobile …

A pyrosequencing-based metagenomic study of methane-producing microbial community in solid-state biogas reactor

A Li, Y Chu, X Wang, L Ren, J Yu, X Liu, J Yan… - Biotechnology for …, 2013 - Springer
Background A solid-state anaerobic digestion method is used to produce biogas from
various solid wastes in China but the efficiency of methane production requires constant …

Industrial activated sludge exhibit unique bacterial community composition at high taxonomic ranks

FM Ibarbalz, ELM Figuerola, L Erijman - Water research, 2013 - Elsevier
Biological degradation of domestic and industrial wastewater by activated sludge depends
on a common process of separation of the diverse self-assembled and self-sustained …

Anthropogenic pollution gradient along a mountain river affects bacterial community composition and genera with potential pathogenic species

A Lenart-Boroń, P Boroń, K Kulik, J Prajsnar… - Scientific Reports, 2022 - nature.com
Mountain regions in Poland are among the most frequently visited tourist destinations,
causing a significant anthropogenic pressure put on the local rivers. In this study, based on …

Metagenomic analysis of the airborne environment in urban spaces

NA Be, JB Thissen, VY Fofanov, JE Allen, M Rojas… - Microbial Ecology, 2015 - Springer
The organisms in aerosol microenvironments, especially densely populated urban areas,
are relevant to maintenance of public health and detection of potential epidemic or biothreat …

Viruses in the desert: a metagenomic survey of viral communities in four perennial ponds of the Mauritanian Sahara

L Fancello, S Trape, C Robert, M Boyer… - The ISME …, 2013 - academic.oup.com
Here, we present the first metagenomic study of viral communities from four perennial ponds
(gueltas) located in the central Sahara (Mauritania). Three of the four gueltas (Ilij, Molomhar …

Nanoarchaeota, their Sulfolobales host, and Nanoarchaeota virus distribution across Yellowstone National Park hot springs

JH Munson-McGee, EK Field, M Bateson… - Applied and …, 2015 - Am Soc Microbiol
Nanoarchaeota are obligate symbionts with reduced genomes first described from marine
thermal vent environments. Here, both community metagenomics and single-cell analysis …

Metagenomic insights into microbial diversity in a groundwater basin impacted by a variety of anthropogenic activities

P Sonthiphand, S Ruangroengkulrith… - … Science and Pollution …, 2019 - Springer
Microbial communities in groundwater are diverse and each may respond differently to
environmental change. The goal of this study was to investigate the diversity, abundance …