Unveiling the potential of systems biology in biotechnology and biomedical research

S Saranya, L Thamanna, P Chellapandi - Systems Microbiology and …, 2024 - Springer
Abstract “In silico organisms” are computational genome-scale metabolic models used in
systems and synthetic biology developed by constraint-based metabolic simulations using …

Physiological, metabolic and biotechnological features of extremely thermophilic microorganisms

JA Counts, BM Zeldes, LL Lee… - … Systems Biology and …, 2017 - Wiley Online Library
The current upper thermal limit for life as we know it is approximately 120° C.
Microorganisms that grow optimally at temperatures of 75° C and above are usually referred …

Protein thermostability is owing to their preferences to non-polar smaller volume amino acids, variations in residual physico-chemical properties and more salt-bridges

AS Panja, B Bandopadhyay, S Maiti - PloS one, 2015 - journals.plos.org
Introduction Protein thermostability is an important field for its evolutionary perspective of
mesophilic versus thermophilic relationship and for its industrial/therapeutic applications …

Correlating enzyme annotations with a large set of microbial growth temperatures reveals metabolic adaptations to growth at diverse temperatures

MKM Engqvist - BMC microbiology, 2018 - Springer
Background The ambient temperature of all habitats is a key physical property that shapes
the biology of microbes inhabiting them. The optimal growth temperature (OGT) of a …

Genome‐scale metabolic modelling of extremophiles and its applications in astrobiological environments

N Noirungsee, S Changkhong, K Phinyo… - Environmental …, 2024 - Wiley Online Library
Metabolic modelling approaches have become the powerful tools in modern biology. These
mathematical models are widely used to predict metabolic phenotypes of the organisms or …

Clostridioides difficile 630Δerm in silico and in vivo – quantitative growth and extensive polysaccharide secretion

H Dannheim, SE Will, D Schomburg… - FEBS Open …, 2017 - Wiley Online Library
Antibiotic‐associated infections with Clostridioides difficile are a severe and often lethal risk
for hospitalized patients, and can also affect populations without these classical risk factors …

Co-utilization of glucose and xylose by evolved Thermus thermophilus LC113 strain elucidated by 13C metabolic flux analysis and whole genome sequencing

LT Cordova, J Lu, RM Cipolla, NR Sandoval… - Metabolic …, 2016 - Elsevier
We evolved Thermus thermophilus to efficiently co-utilize glucose and xylose, the two most
abundant sugars in lignocellulosic biomass, at high temperatures without carbon catabolite …

A Genome Scale Model of Geobacillus thermoglucosidasius (C56-YS93) reveals its biotechnological potential on rice straw hydrolysate

A Ahmad, HB Hartman, S Krishnakumar, DA Fell… - Journal of …, 2017 - Elsevier
Rice straw is a major crop residue which is burnt in many countries, creating significant air
pollution. Thus, alternative routes for disposal of rice straw are needed. Biotechnological …

Cancer cell metabolism as new targets for novel designed therapies

IM de Mas, E Aguilar, A Jayaraman… - Future medicinal …, 2014 - Taylor & Francis
Metabolic processes are altered in cancer cells, which obtain advantages from this
metabolic reprogramming in terms of energy production and synthesis of biomolecules that …

Genome-scale metabolic reconstruction and metabolic versatility of an obligate methanotroph Methylococcus capsulatus str. Bath

A Gupta, A Ahmad, D Chothwe, MK Madhu… - PeerJ, 2019 - peerj.com
The increase in greenhouse gases with high global warming potential such as methane is a
matter of concern and requires multifaceted efforts to reduce its emission and increase its …