The protein folding 'speed limit'

J Kubelka, J Hofrichter, WA Eaton - Current opinion in structural biology, 2004 - Elsevier
How fast can a protein possibly fold? This question has stimulated experimentalists to seek
fast folding proteins and to engineer them to fold even faster. Proteins folding at or near the …

Fast kinetics and mechanisms in protein folding

WA Eaton, V Muñoz, SJ Hagen, GS Jas… - Annual review of …, 2000 - annualreviews.org
▪ Abstract This review describes how kinetic experiments using techniques with dramatically
improved time resolution have contributed to understanding mechanisms in protein folding …

[HTML][HTML] Exploring the helix-coil transition via all-atom equilibrium ensemble simulations

EJ Sorin, VS Pande - Biophysical journal, 2005 - cell.com
The ensemble folding of two 21-residue α-helical peptides has been studied using all-atom
simulations under several variants of the AMBER potential in explicit solvent using a global …

Combined electronic structure/molecular dynamics approach for ultrafast infrared spectroscopy of dilute HOD in liquid H2O and D2O

SA Corcelli, CP Lawrence, JL Skinner - The Journal of chemical …, 2004 - pubs.aip.org
We present a new approach that combines electronic structure methods and molecular
dynamics simulations to investigate the infrared spectroscopy of condensed phase systems …

Evaluation of a fast implicit solvent model for molecular dynamics simulations

P Ferrara, J Apostolakis… - … : Structure, Function, and …, 2002 - Wiley Online Library
A solvation term based on the solvent accessible surface area (SASA) is combined with the
CHARMM polar hydrogen force field for the efficient simulation of peptides and small …

UV resonance Raman investigations of peptide and protein structure and dynamics

SA Oladepo, K Xiong, Z Hong, SA Asher… - Chemical …, 2012 - ACS Publications
1.1. Protein Folding Problem An understanding of the mechanism (s) of protein folding,
whereby the ribosome synthesized biopolymer folds into its native protein, is arguably one of …

Raman spectroscopy

SP Mulvaney, CD Keating - Analytical Chemistry, 2000 - ACS Publications
This review of Raman spectroscopy covers the two-year period from late 1997 through late
1999. The previous two-year period has been comprehensively reviewed (1). There …

UV Resonance Raman Determination of Molecular Mechanism of Poly(N-isopropylacrylamide) Volume Phase Transition

Z Ahmed, EA Gooding, KV Pimenov… - The Journal of …, 2009 - ACS Publications
Poly (N-isopropylacrylamide)(PNIPAM) is the premier example of a macromolecule that
undergoes a hydrophobic collapse when heated above its lower critical solution …

[HTML][HTML] Solution structure and dynamics of biomolecules from Raman optical activity

LD Barron, L Hecht, EW Blanch, AF Bell - Progress in Biophysics and …, 2000 - Elsevier
Raman optical activity (ROA) measures vibrational optical activity by means of a small
difference in the intensity of Raman scattering from chiral molecules in right and left …

Helix formation via conformation diffusion search

CY Huang, Z Getahun, Y Zhu… - Proceedings of the …, 2002 - National Acad Sciences
The helix-coil transition kinetics of an α-helical peptide were investigated by time-resolved
infrared spectroscopy coupled with laser-induced temperature-jump initiation method …