Metabolic burden: cornerstones in synthetic biology and metabolic engineering applications

G Wu, Q Yan, JA Jones, YJ Tang, SS Fong… - Trends in …, 2016 - cell.com
Engineering cell metabolism for bioproduction not only consumes building blocks and
energy molecules (eg, ATP) but also triggers energetic inefficiency inside the cell. The …

Engineering robust production microbes for large-scale cultivation

M Wehrs, D Tanjore, T Eng, J Lievense, TR Pray… - Trends in …, 2019 - cell.com
Systems biology and synthetic biology are increasingly used to examine and modulate
complex biological systems. As such, many issues arising during scaling-up microbial …

Biosystems design by machine learning

MJ Volk, I Lourentzou, S Mishra, LT Vo… - ACS synthetic …, 2020 - ACS Publications
Biosystems such as enzymes, pathways, and whole cells have been increasingly explored
for biotechnological applications. However, the intricate connectivity and resulting …

Generative artificial intelligence GPT-4 accelerates knowledge mining and machine learning for synthetic biology

Z Xiao, W Li, H Moon, GW Roell, Y Chen… - ACS synthetic …, 2023 - ACS Publications
Knowledge mining from synthetic biology journal articles for machine learning (ML)
applications is a labor-intensive process. The development of natural language processing …

Metabolic engineering of Synechocystis sp. strain PCC 6803 for isobutanol production

AM Varman, Y Xiao, HB Pakrasi… - Applied and …, 2013 - Am Soc Microbiol
Global warming and decreasing fossil fuel reserves have prompted great interest in the
synthesis of advanced biofuels from renewable resources. In an effort to address these …

Progress in terpene synthesis strategies through engineering of Saccharomyces cerevisiae

K Paramasivan, S Mutturi - Critical reviews in biotechnology, 2017 - Taylor & Francis
Terpenes are natural products with a remarkable diversity in their chemical structures and
they hold a significant market share commercially owing to their distinct applications. These …

Leveraging knowledge engineering and machine learning for microbial bio-manufacturing

T Oyetunde, FS Bao, JW Chen, HG Martin… - Biotechnology …, 2018 - Elsevier
Genome scale modeling (GSM) predicts the performance of microbial workhorses and helps
identify beneficial gene targets. GSM integrated with intracellular flux dynamics, omics, and …

Applications of yeast synthetic biology geared towards the production of biopharmaceuticals

RSK Walker, IS Pretorius - Genes, 2018 - mdpi.com
Engineered yeast are an important production platform for the biosynthesis of high-value
compounds with medical applications. Recent years have witnessed several new …

Yeast synthetic biology for high-value metabolites

Z Dai, Y Liu, J Guo, L Huang… - FEMS Yeast Research, 2015 - search.proquest.com
Traditionally, high-value metabolites have been produced through direct extraction from
natural biological sources which are inefficient, given the low abundance of these …

Applications of computational modeling in metabolic engineering of yeast

EJ Kerkhoven, PJ Lahtvee, J Nielsen - FEMS yeast research, 2015 - academic.oup.com
Synthetic biology and metabolic engineering enable generation of novel cell factories that
efficiently convert renewable feedstocks into biofuels, bulk, and fine chemicals, thus creating …