Challenges, progress and promises of metabolite annotation for LC–MS-based metabolomics

R Chaleckis, I Meister, P Zhang… - Current opinion in …, 2019 - Elsevier
Highlights•Data independent MS/MS acquisition methods improve metabolite
identification.•A step-by-step workflow is needed to assess the accuracy of metabolite …

Metabolomics and multi-omics integration: a survey of computational methods and resources

T Eicher, G Kinnebrew, A Patt, K Spencer, K Ying, Q Ma… - Metabolites, 2020 - mdpi.com
As researchers are increasingly able to collect data on a large scale from multiple clinical
and omics modalities, multi-omics integration is becoming a critical component of …

LncRNA H19 promotes tumor angiogenesis in smokers by targeting anti-angiogenic miRNAs

M Shirvaliloo - Epigenomics, 2023 - Taylor & Francis
A key concept in drug discovery is the identification of candidate therapeutic targets such as
long noncoding RNAs (lncRNAs) because of their extensive involvement in neoplasms, and …

Novel DNA methylation sites associated with cigarette smoking among African Americans

V Barcelona, Y Huang, K Brown, J Liu, W Zhao, M Yu… - Epigenetics, 2019 - Taylor & Francis
Introduction: Cigarette smoking has been associated with adverse health outcomes for
mothers and children and is a major contributor to heart disease. Although cigarette smoking …

Characterizing the properties of bisulfite sequencing data: maximizing power and sensitivity to identify between-group differences in DNA methylation

D Seiler Vellame, I Castanho, A Dahir, J Mill, E Hannon - BMC genomics, 2021 - Springer
Background The combination of sodium bisulfite treatment with highly-parallel sequencing is
a common method for quantifying DNA methylation across the genome. The power to detect …

Metabolomics and cardiovascular imaging: a combined approach for cardiovascular ageing

AS Koh, JP Kovalik - ESC Heart Failure, 2021 - Wiley Online Library
The purpose of this review is to explore how metabolomics can help uncover new
biomarkers and mechanisms for cardiovascular ageing. Cardiovascular ageing refers to …

Metabolomics in radiation biodosimetry: current approaches and advances

MM Satyamitra, DR Cassatt, BA Hollingsworth… - Metabolites, 2020 - mdpi.com
Triage and medical intervention strategies for unanticipated exposure during a radiation
incident benefit from the early, rapid and accurate assessment of dose level. Radiation …

DNA methylation of TXNIP independently associated with inflammation and diabetes mellitus in twins

Y Xiang, Z Wang, Q Hui, M Gwinn… - Twin Research and …, 2021 - cambridge.org
Thioredoxin-interacting protein (TXNIP) plays a key role in diabetes development and
prognosis through its role in pancreatic β-cell dysfunction and death as well as in …

Pharmacoepigenetic processors: epigenetic drugs, drug resistance, toxicoepigenetics, and nutriepigenetics

R Cacabelos, JC Carril, A Sanmartín, P Cacabelos - Pharmacoepigenetics, 2019 - Elsevier
The pharmacoepigenetic apparatus is integrated by gene clusters of different categories,
including (i) pathogenic genes involved in disease pathogenesis,(ii) mechanistic genes …

Connecting the epigenome, metabolome and proteome for a deeper understanding of disease

K Suhre, S Zaghlool - Journal of internal medicine, 2021 - Wiley Online Library
Epigenome‐wide association studies (EWAS) identify genes that are dysregulated by the
studied clinical endpoints, thereby indicating potential new diagnostic biomarkers, drug …