Comparison of metabolic states using genome-scale metabolic models

C Sarathy, M Breuer, M Kutmon… - PLoS Computational …, 2021 - journals.plos.org
Genome-scale metabolic models (GEMs) are comprehensive knowledge bases of cellular
metabolism and serve as mathematical tools for studying biological phenotypes and …

Volume of the steady-state space of financial flows in a monetary stock-flow-consistent model

A Hazan - Physica A: Statistical Mechanics and its Applications, 2017 - Elsevier
We show that a steady-state stock-flow consistent macro-economic model can be
represented as a Constraint Satisfaction Problem (CSP). The set of solutions is a polytope …

ComMet: A method for comparing metabolic states in genome-scale metabolic models

C Sarathy, M Breuer, M Kutmon, ME Adriaens… - bioRxiv, 2020 - biorxiv.org
Being a comprehensive knowledge bases of cellular metabolism, Genome-scale metabolic
models (GEMs) serve as mathematical tools for studying cellular flux states in various or …

Assessing FBA Optimal States in the Feasible Flux Phenotypic Space

O Güell, O Güell - A Network-Based Approach to Cell Metabolism: From …, 2017 - Springer
Optimal growth solutions can be confronted with the whole set of feasible flux phenotypes
(FFP), which provides a reference map that helps to assess the likelihood of optimal and …

A network-based approach to cell metabolism: from structure to flux balances

O Güell Riera - 2015 - diposit.ub.edu
[eng] The thesis called “A network-based approach to cell metabolism: from structure to flux
balances” shows how the vision of cell metabolism as a whole allows to unveil new …