HIV-1 and SARS-CoV-2: Patterns in the evolution of two pandemic pathogens
Humanity is currently facing the challenge of two devastating pandemics caused by two very
different RNA viruses: HIV-1, which has been with us for decades, and SARS-CoV-2, which …
different RNA viruses: HIV-1, which has been with us for decades, and SARS-CoV-2, which …
[HTML][HTML] Tracking changes in SARS-CoV-2 spike: evidence that D614G increases infectivity of the COVID-19 virus
A SARS-CoV-2 variant carrying the Spike protein amino acid change D614G has become
the most prevalent form in the global pandemic. Dynamic tracking of variant frequencies …
the most prevalent form in the global pandemic. Dynamic tracking of variant frequencies …
Intra-host variation and evolutionary dynamics of SARS-CoV-2 populations in COVID-19 patients
Abstract Background Since early February 2021, the causative agent of COVID-19, SARS-
CoV-2, has infected over 104 million people with more than 2 million deaths according to …
CoV-2, has infected over 104 million people with more than 2 million deaths according to …
The first three waves of the Covid-19 pandemic hint at a limited genetic repertoire for SARS-CoV-2
TM Wassenaar, V Wanchai, G Buzard… - FEMS Microbiology …, 2022 - academic.oup.com
The genomic diversity of SARS-CoV-2 is the result of a relatively low level of spontaneous
mutations introduced during viral replication. With millions of SARS-CoV-2 genome …
mutations introduced during viral replication. With millions of SARS-CoV-2 genome …
[HTML][HTML] Genomic sequencing effort for SARS-CoV-2 by country during the pandemic
Y Furuse - International Journal of Infectious Diseases, 2021 - Elsevier
Since the emergence of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2),
tremendous efforts have been made to sequence the viral genome from samples collected …
tremendous efforts have been made to sequence the viral genome from samples collected …
Swiss public health measures associated with reduced SARS-CoV-2 transmission using genome data
SA Nadeau, TG Vaughan, C Beckmann… - Science Translational …, 2022 - science.org
Genome sequences from evolving infectious pathogens allow quantification of case
introductions and local transmission dynamics. We sequenced 11,357 severe acute …
introductions and local transmission dynamics. We sequenced 11,357 severe acute …
SARS-CoV-2 outbreak on a Spanish mink farm: epidemiological, molecular, and pathological studies
JJ Badiola, A Otero, E Sevilla, B Marín… - Frontiers in Veterinary …, 2022 - frontiersin.org
Farmed minks have been reported to be highly susceptible to severe acute respiratory
syndrome coronavirus 2 (SARS-CoV-2) and may represent a risk to humans. In this study …
syndrome coronavirus 2 (SARS-CoV-2) and may represent a risk to humans. In this study …
Shortcomings of SARS-CoV-2 genomic metadata
L Gozashti, R Corbett-Detig - BMC research notes, 2021 - Springer
Abstract Objective The SARS-CoV-2 pandemic has prompted one of the most extensive and
expeditious genomic sequencing efforts in history. Each viral genome is accompanied by a …
expeditious genomic sequencing efforts in history. Each viral genome is accompanied by a …
Temporal increase in D614G mutation of SARS-CoV-2 in the Middle East and North Africa
Background Phylogeny construction can help to reveal evolutionary relatedness among
molecular sequences. The spike (S) gene of SARS-CoV-2 is the subject of an immune …
molecular sequences. The spike (S) gene of SARS-CoV-2 is the subject of an immune …
Evolution of viral variants in remdesivir‐treated and untreated SARS‐CoV‐2‐infected pediatrics patients
Detailed information on intrahost viral evolution in SARS‐CoV‐2 with and without treatment
is limited. Sequential viral loads and deep sequencing of SARS‐CoV‐2 from the upper …
is limited. Sequential viral loads and deep sequencing of SARS‐CoV‐2 from the upper …