Genotyping‐by‐sequencing approaches to characterize crop genomes: choosing the right tool for the right application

A Scheben, J Batley, D Edwards - Plant biotechnology journal, 2017 - Wiley Online Library
In the last decade, the revolution in sequencing technologies has deeply impacted crop
genotyping practice. New methods allowing rapid, high‐throughput genotyping of entire …

Emerging genomic tools for legume breeding: current status and future prospects

MK Pandey, M Roorkiwal, VK Singh… - Frontiers in Plant …, 2016 - frontiersin.org
Legumes play a vital role in ensuring global nutritional food security and improving soil
quality through nitrogen fixation. Accelerated higher genetic gains is required to meet the …

A reference genome for pea provides insight into legume genome evolution

J Kreplak, MA Madoui, P Cápal, P Novák, K Labadie… - Nature …, 2019 - nature.com
We report the first annotated chromosome-level reference genome assembly for pea, Gregor
Mendel's original genetic model. Phylogenetics and paleogenomics show genomic …

The pangenome of hexaploid bread wheat

JD Montenegro, AA Golicz, PE Bayer… - The Plant …, 2017 - Wiley Online Library
There is an increasing understanding that variation in gene presence–absence plays an
important role in the heritability of agronomic traits; however, there have been relatively few …

A multi-omic Nicotiana benthamiana resource for fundamental research and biotechnology

B Ranawaka, J An, MT Lorenc, H Jung, M Sulli… - Nature Plants, 2023 - nature.com
Nicotiana benthamiana is an invaluable model plant and biotechnology platform with a~ 3
Gb allotetraploid genome. To further improve its usefulness and versatility, we have …

Genome resources for climate‐resilient cowpea, an essential crop for food security

M Muñoz‐Amatriaín, H Mirebrahim, P Xu… - The Plant …, 2017 - Wiley Online Library
Summary Cowpea (Vigna unguiculata L. Walp.) is a legume crop that is resilient to hot and
drought‐prone climates, and a primary source of protein in sub‐Saharan Africa and other …

Assembly and comparison of two closely related Brassica napus genomes

PE Bayer, B Hurgobin, AA Golicz… - Plant biotechnology …, 2017 - Wiley Online Library
As an increasing number of plant genome sequences become available, it is clear that gene
content varies between individuals, and the challenge arises to predict the gene content of a …

Accessing complex crop genomes with next-generation sequencing

D Edwards, J Batley, RJ Snowdon - Theoretical and Applied Genetics, 2013 - Springer
Many important crop species have genomes originating from ancestral or recent
polyploidisation events. Multiple homoeologous gene copies, chromosomal rearrangements …

Genotyping-by-sequencing (GBS) revealed molecular genetic diversity of Iranian wheat landraces and cultivars

H Alipour, MR Bihamta, V Mohammadi… - Frontiers in plant …, 2017 - frontiersin.org
Background: Genetic diversity is an essential resource for breeders to improve new cultivars
with desirable characteristics. Recently, genotyping-by-sequencing (GBS), a next …

Investigating drought tolerance in chickpea using genome-wide association mapping and genomic selection based on whole-genome resequencing data

Y Li, P Ruperao, J Batley, D Edwards, T Khan… - Frontiers in Plant …, 2018 - frontiersin.org
Drought tolerance is a complex trait that involves numerous genes. Identifying key causal
genes or linked molecular markers can facilitate the fast development of drought tolerant …