Transposon insertion sequencing: a new tool for systems-level analysis of microorganisms

T Van Opijnen, A Camilli - Nature Reviews Microbiology, 2013 - nature.com
Our knowledge of gene function has increasingly lagged behind gene discovery, hindering
our understanding of the genetic basis of microbial phenotypes. Recently, however …

How sisters grow apart: mycobacterial growth and division

KJ Kieser, EJ Rubin - Nature Reviews Microbiology, 2014 - nature.com
Mycobacterium tuberculosis, which is the aetiological agent of tuberculosis, owes much of its
success as a pathogen to its unique cell wall and unusual mechanism of growth, which …

Genome-wide gene expression tuning reveals diverse vulnerabilities of M. tuberculosis

B Bosch, MA DeJesus, NC Poulton, W Zhang… - Cell, 2021 - cell.com
Antibacterial agents target the products of essential genes but rarely achieve complete
target inhibition. Thus, the all-or-none definition of essentiality afforded by traditional genetic …

Comprehensive Essentiality Analysis of the Mycobacterium tuberculosis Genome via Saturating Transposon Mutagenesis

MA DeJesus, ER Gerrick, W Xu, SW Park, JE Long… - MBio, 2017 - Am Soc Microbiol
For decades, identifying the regions of a bacterial chromosome that are necessary for
viability has relied on mapping integration sites in libraries of random transposon mutants to …

DEG 15, an update of the Database of Essential Genes that includes built-in analysis tools

H Luo, Y Lin, T Liu, FL Lai, CT Zhang… - Nucleic acids …, 2021 - academic.oup.com
Essential genes refer to genes that are required by an organism to survive under specific
conditions. Studies of the minimal-gene-set for bacteria have elucidated fundamental …

Programmable transcriptional repression in mycobacteria using an orthogonal CRISPR interference platform

JM Rock, FF Hopkins, A Chavez, M Diallo… - Nature …, 2017 - nature.com
The development of new drug regimens that allow rapid, sterilizing treatment of tuberculosis
has been limited by the complexity and time required for genetic manipulations in …

The Essential Genome of Escherichia coli K-12

ECA Goodall, A Robinson, IG Johnston, S Jabbari… - MBio, 2018 - Am Soc Microbiol
Transposon-directed insertion site sequencing (TraDIS) is a high-throughput method
coupling transposon mutagenesis with short-fragment DNA sequencing. It is commonly used …

Mycobacterium tuberculosis lineage 4 comprises globally distributed and geographically restricted sublineages

D Stucki, D Brites, L Jeljeli, M Coscolla, Q Liu… - Nature …, 2016 - nature.com
Generalist and specialist species differ in the breadth of their ecological niches. Little is
known about the niche width of obligate human pathogens. Here we analyzed a global …

DEG 10, an update of the database of essential genes that includes both protein-coding genes and noncoding genomic elements

H Luo, Y Lin, F Gao, CT Zhang… - Nucleic acids research, 2014 - academic.oup.com
The combination of high-density transposon-mediated mutagenesis and high-throughput
sequencing has led to significant advancements in research on essential genes, resulting in …

[HTML][HTML] Tryptophan biosynthesis protects mycobacteria from CD4 T-cell-mediated killing

YJ Zhang, MC Reddy, TR Ioerger, AC Rothchild… - Cell, 2013 - cell.com
Bacteria that cause disease rely on their ability to counteract and overcome host defenses.
Here, we present a genome-scale study of Mycobacterium tuberculosis (Mtb) that uncovers …