Current status of structural variation studies in plants
Structural variations (SVs) including gene presence/absence variations and copy number
variations are a common feature of genomes in plants and, together with single nucleotide …
variations are a common feature of genomes in plants and, together with single nucleotide …
Exploring the gene pool of Brassica napus by genomics‐based approaches
D Hu, J Jing, RJ Snowdon, AS Mason… - Plant Biotechnology …, 2021 - Wiley Online Library
De novo allopolyploidization in Brassica provides a very successful model for reconstructing
polyploid genomes using progenitor species and relatives to broaden crop gene pools and …
polyploid genomes using progenitor species and relatives to broaden crop gene pools and …
Two gap-free reference genomes and a global view of the centromere architecture in rice
Rice (Oryza sativa), a major staple throughout the world and a model system for plant
genomics and breeding, was the first crop genome sequenced almost two decades ago …
genomics and breeding, was the first crop genome sequenced almost two decades ago …
Impacts of allopolyploidization and structural variation on intraspecific diversification in Brassica rapa
Background Despite the prevalence and recurrence of polyploidization in the speciation of
flowering plants, its impacts on crop intraspecific genome diversification are largely …
flowering plants, its impacts on crop intraspecific genome diversification are largely …
Genome-wide detection of cytosine methylations in plant from Nanopore data using deep learning
In plants, cytosine DNA methylations (5mCs) can happen in three sequence contexts as
CpG, CHG, and CHH (where H= A, C, or T), which play different roles in the regulation of …
CpG, CHG, and CHH (where H= A, C, or T), which play different roles in the regulation of …
A near‐complete genome assembly of Brassica rapa provides new insights into the evolution of centromeres
L Zhang, J Liang, H Chen, Z Zhang… - Plant biotechnology …, 2023 - Wiley Online Library
Brassica rapa comprises many important cultivated vegetables and oil crops. However,
Chiifu v3. 0, the current B. rapa reference genome, still contains hundreds of gaps. Here, we …
Chiifu v3. 0, the current B. rapa reference genome, still contains hundreds of gaps. Here, we …
Long-read assembly of the Brassica napus reference genome Darmor-bzh
Background The combination of long reads and long-range information to produce genome
assemblies is now accepted as a common standard. This strategy not only allows access to …
assemblies is now accepted as a common standard. This strategy not only allows access to …
Genomic insights into the origin, domestication and diversification of Brassica juncea
L Kang, L Qian, M Zheng, L Chen, H Chen, L Yang… - Nature …, 2021 - nature.com
Despite early domestication around 3000 BC, the evolutionary history of the ancient
allotetraploid species Brassica juncea (L.) Czern & Coss remains uncertain. Here, we report …
allotetraploid species Brassica juncea (L.) Czern & Coss remains uncertain. Here, we report …
The final piece of the Triangle of U: Evolution of the tetraploid Brassica carinata genome
Ethiopian mustard (Brassica carinata) is an ancient crop with remarkable stress resilience
and a desirable seed fatty acid profile for biofuel uses. Brassica carinata is one of six …
and a desirable seed fatty acid profile for biofuel uses. Brassica carinata is one of six …
A telomere-to-telomere cotton genome assembly reveals centromere evolution and a Mutator transposon-linked module regulating embryo development
Assembly of complete genomes can reveal functional genetic elements missing from draft
sequences. Here we present the near-complete telomere-to-telomere and contiguous …
sequences. Here we present the near-complete telomere-to-telomere and contiguous …