Regulation of Ergosterol Biosynthesis in Saccharomyces cerevisiae

T Jordá, S Puig - Genes, 2020 - mdpi.com
Ergosterol is an essential component of fungal cell membranes that determines the fluidity,
permeability and activity of membrane-associated proteins. Ergosterol biosynthesis is a …

Yeast systems biology: model organism and cell factory

J Nielsen - Biotechnology journal, 2019 - Wiley Online Library
For thousands of years, the yeast Saccharomyces cerevisiae (S. cerevisiae) has served as a
cell factory for the production of bread, beer, and wine. In more recent years, this yeast has …

Transcription factors and ABC transporters: from pleiotropic drug resistance to cellular signaling in yeast

ER Buechel, HW Pinkett - FEBS letters, 2020 - Wiley Online Library
Budding yeast Saccharomyces cerevisiae survives in microenvironments utilizing networks
of regulators and ATP‐binding cassette (ABC) transporters to circumvent toxins and a variety …

Transcriptional regulation of ergosterol biosynthesis genes in response to iron deficiency

T Jordá, M Barba‐Aliaga, N Rozès… - Environmental …, 2022 - Wiley Online Library
Iron participates as an essential cofactor in the biosynthesis of critical cellular components,
including DNA, proteins and lipids. The ergosterol biosynthetic pathway, which is an …

DNA variants affecting the expression of numerous genes in trans have diverse mechanisms of action and evolutionary histories

S Lutz, C Brion, M Kliebhan, FW Albert - PLoS Genetics, 2019 - journals.plos.org
DNA variants that alter gene expression contribute to variation in many phenotypic traits. In
particular, trans-acting variants, which are often located on different chromosomes from the …

Dual threshold optimization and network inference reveal convergent evidence from TF binding locations and TF perturbation responses

Y Kang, NR Patel, C Shively, PS Recio, X Chen… - Genome …, 2020 - genome.cshlp.org
A high-confidence map of the direct, functional targets of each transcription factor (TF)
requires convergent evidence from independent sources. Two significant sources of …

Key enzymes involved in the utilization of fatty acids by Saccharomyces cerevisiae: a review

Z Wang, C Su, Y Zhang, S Shangguan… - Frontiers in …, 2024 - frontiersin.org
Saccharomyces cerevisiae is a eukaryotic organism with a clear genetic background and
mature gene operating system; in addition, it exhibits environmental tolerance. Therefore, S …

The leucine zipper domain of the transcriptional repressor Opi1 underlies a signal transduction mechanism regulating lipid synthesis

JP Fernández-Murray, M Tavasoli, J Williams… - Journal of Biological …, 2023 - ASBMB
In Saccharomyces cerevisiae, the transcriptional repressor Opi1 regulates the expression of
genes involved in phospholipid synthesis responding to the abundance of the phospholipid …

Inferring TF activities and activity regulators from gene expression data with constraints from TF perturbation data

CZ Ma, MR Brent - Bioinformatics, 2021 - academic.oup.com
Motivation The activity of a transcription factor (TF) in a sample of cells is the extent to which
it is exerting its regulatory potential. Many methods of inferring TF activity from gene …

ChEC-seq2: an improved chromatin endogenous cleavage sequencing method and bioinformatic analysis pipeline for mapping in vivo protein–DNA interactions

J VanBelzen, C Duan, DG Brickner… - NAR Genomics and …, 2024 - academic.oup.com
Defining the in vivo DNA binding specificity of transcription factors (TFs) has relied nearly
exclusively on chromatin immunoprecipitation (ChIP). While ChIP reveals TF binding …