Optical tweezers in single-molecule biophysics

CJ Bustamante, YR Chemla, S Liu… - Nature Reviews Methods …, 2021 - nature.com
Optical tweezers have become the method of choice in single-molecule manipulation
studies. In this Primer, we first review the physical principles of optical tweezers and the …

DNA supercoiling during transcription

J Ma, MD Wang - Biophysical reviews, 2016 - Springer
The twin-supercoiled-domain model describes how transcription can drive DNA
supercoiling, and how DNA supercoiling, in turn, plays an important role in regulating gene …

DNA Mechanics: From Single Stranded to Self-Assembled

L Yang, Q Li, Z Ge, C Fan, W Huang - Nano Letters, 2024 - ACS Publications
DNA encodes genetic information and forms various structural conformations with distinct
physical, chemical, and biological properties. Over the past 30 years, advancements in force …

Torsional stiffness of extended and plectonemic DNA

X Gao, Y Hong, F Ye, JT Inman, MD Wang - Physical review letters, 2021 - APS
DNA torsional elastic properties play a crucial role in DNA structure, topology, and the
regulation of motor protein progression. However, direct measurements of these parameters …

Torque measurement at the single-molecule level

S Forth, MY Sheinin, J Inman… - Annual review of …, 2013 - annualreviews.org
Methods for exerting and measuring forces on single molecules have revolutionized the
study of the physics of biology. However, it is often the case that biological processes involve …

Optical torque calculations and measurements for DNA torsional studies

Y Hong, F Ye, J Qian, X Gao, JT Inman, MD Wang - Biophysical journal, 2024 - cell.com
The angular optical trap (AOT) is a powerful instrument for measuring the torsional and
rotational properties of a biological molecule. Thus far, AOT studies of DNA torsional …

Tunable elliptical cylinders for rotational mechanical studies of single DNA molecules

Y Hong, F Ye, X Gao, JT Inman, MD Wang - Science Advances, 2024 - science.org
The angular optical trap (AOT) is a powerful technique for measuring the DNA topology and
rotational mechanics of fundamental biological processes. Realizing the full potential of the …

Formation of Extrachromosomal Circular DNA from Long Terminal Repeats of Retrotransposons in Saccharomyces cerevisiae

HD Møller, CE Larsen, L Parsons… - G3: Genes …, 2016 - academic.oup.com
Extrachromosomal circular DNA (eccDNA) derived from chromosomal Ty retrotransposons
in yeast can be generated in multiple ways. Ty eccDNA can arise from the circularization of …

Scanning evanescent fields using a pointlike light source and a nanomechanical DNA gear

H Brutzer, FW Schwarz, R Seidel - Nano letters, 2012 - ACS Publications
The characterization of three-dimensional inhomogeneous illumination fields is a challenge
in modern microscopy. Here we use a four-arm DNA junction as a nanomechanical …

Calibration of the optical torque wrench

F Pedaci, Z Huang, M van Oene, NH Dekker - Optics express, 2012 - opg.optica.org
The optical torque wrench is a laser trapping technique that expands the capability of
standard optical tweezers to torque manipulation and measurement, using the laser linear …