[HTML][HTML] Analysis of SARS-CoV-2 synonymous codon usage evolution throughout the COVID-19 pandemic
Abstract SARS-CoV-2, the seventh coronavirus known to infect humans, can cause severe
life-threatening respiratory pathologies. To better understand SARS-CoV-2 evolution …
life-threatening respiratory pathologies. To better understand SARS-CoV-2 evolution …
Optimization and deoptimization of codons in SARS‐CoV‐2 and related implications for vaccine development
The spread of coronavirus disease 2019 (COVID‐19), caused by severe respiratory
syndrome coronavirus 2 (SARS‐CoV‐2), has progressed into a global pandemic. To date …
syndrome coronavirus 2 (SARS‐CoV‐2), has progressed into a global pandemic. To date …
Codon usage bias analysis of the spike protein of human coronavirus 229E and its host adaptability
M Lu, W Wan, Y Li, H Li, B Sun, K Yu, J Zhao… - International Journal of …, 2023 - Elsevier
Abstract Human coronavirus 229E (HCoV-229E) represents one of the known coronaviruses
capable of infecting humans and causes mild respiratory symptoms. It is also considered to …
capable of infecting humans and causes mild respiratory symptoms. It is also considered to …
Mutation and codon bias analysis of the spike protein of Omicron, the recent variant of SARS-CoV-2
Y Lu, W Wang, H Liu, Y Li, G Yan, G Franzo… - International Journal of …, 2023 - Elsevier
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) Omicron variant is a
heavily mutated virus and designated as a variant of concern. To investigate the codon …
heavily mutated virus and designated as a variant of concern. To investigate the codon …
Genomic characterization of emerging sars-cov-2: A systematic review
Introduction: Severe Acute Respiratory Syndrome Coronavirus–2, SARS-CoV-2, is a
wellknown virus for its fatal infectivity and widespread impact on the health of the worldwide …
wellknown virus for its fatal infectivity and widespread impact on the health of the worldwide …
Study on the characteristic codon usage pattern in porcine epidemic diarrhea virus genomes and its host adaptation phenotype
F Si, L Jiang, R Yu, W Wei, Z Li - Frontiers in Microbiology, 2021 - frontiersin.org
Porcine epidemic diarrhea virus (PEDV), which classified in the genus Alphacoronavirus,
family Coronaviridae, is one of the most important pathogens that cause heavy economic …
family Coronaviridae, is one of the most important pathogens that cause heavy economic …
SARS-CoV-2 CoCoPUTs: Analyzing GISAID and NCBI data to obtain codon statistics, mutations, and free energy over a multi-year period
NH Padhiar, T Ghazanchyan, SE Fumagalli… - Virus …, 2025 - academic.oup.com
A consistent area of interest since the beginning of the SARS-CoV-2 pandemic has been the
sequence composition of the virus and how it has changed over time. Many resources have …
sequence composition of the virus and how it has changed over time. Many resources have …
Transmission cluster of COVID-19 cases from Uruguay: emergence and spreading of a novel SARS-CoV-2 ORF6 deletion
Y Panzera, N Ramos, L Calleros… - Memórias do Instituto …, 2022 - SciELO Brasil
BACKGROUND Evolutionary changes in severe acute respiratory syndrome coronavirus 2
(SARS-CoV-2) include indels in non-structural, structural, and accessory open reading …
(SARS-CoV-2) include indels in non-structural, structural, and accessory open reading …
Utilizing the codon adaptation index to evaluate the susceptibility to HIV-1 and SARS-CoV-2 related coronaviruses in possible target cells in humans
H Zhou, R Ren, SST Yau - Frontiers in cellular and infection …, 2023 - frontiersin.org
Comprehensive identification of possible target cells for viruses is crucial for understanding
the pathological mechanism of virosis. The susceptibility of cells to viruses depends on …
the pathological mechanism of virosis. The susceptibility of cells to viruses depends on …
Analysis of codon usage bias of exonuclease genes in invertebrate iridescent viruses
YA Dizman - Virology, 2024 - Elsevier
Invertebrate iridescent viruses (IIVs) are double-stranded DNA viruses that belong to the
Iridoviridae family. IIVs result diseases that vary in severity from subclinical to lethal in …
Iridoviridae family. IIVs result diseases that vary in severity from subclinical to lethal in …