Genomic frontiers in congenital heart disease

SU Morton, D Quiat, JG Seidman… - Nature Reviews …, 2022 - nature.com
The application of next-generation sequencing to study congenital heart disease (CHD) is
increasingly providing new insights into the causes and mechanisms of this prevalent birth …

Rare coding variation provides insight into the genetic architecture and phenotypic context of autism

JM Fu, FK Satterstrom, M Peng, H Brand, RL Collins… - Nature …, 2022 - nature.com
Some individuals with autism spectrum disorder (ASD) carry functional mutations rarely
observed in the general population. We explored the genes disrupted by these variants from …

Focus on your locus with a massively parallel reporter assay

JC McAfee, JL Bell, O Krupa, N Matoba… - Journal of …, 2022 - Springer
A growing number of variants associated with risk for neurodevelopmental disorders have
been identified by genome-wide association and whole genome sequencing studies. As …

Mendelian gene discovery: fast and furious with no end in sight

MJ Bamshad, DA Nickerson, JX Chong - The American Journal of Human …, 2019 - cell.com
Gene discovery for Mendelian conditions (MCs) offers a direct path to understanding
genome function. Approaches based on next-generation sequencing applied at scale have …

Structural variants are a major source of gene expression differences in humans and often affect multiple nearby genes

AJ Scott, C Chiang, IM Hall - Genome research, 2021 - genome.cshlp.org
Structural variants (SVs) are an important source of human genome diversity, but their
functional effects are poorly understood. We mapped 61,668 SVs in 613 individuals from the …

[HTML][HTML] Whole-genome and RNA sequencing reveal variation and transcriptomic coordination in the developing human prefrontal cortex

DM Werling, S Pochareddy, J Choi, JY An, B Sheppard… - Cell reports, 2020 - cell.com
Gene expression levels vary across developmental stage, cell type, and region in the brain.
Genomic variants also contribute to the variation in expression, and some neuropsychiatric …

Ranking of non-coding pathogenic variants and putative essential regions of the human genome

A Wells, D Heckerman, A Torkamani, L Yin… - Nature …, 2019 - nature.com
A gene is considered essential if loss of function results in loss of viability, fitness or in
disease. This concept is well established for coding genes; however, non-coding regions …

Genomic diagnosis for pediatric disorders: revolution and evolution

E Lalonde, S Rentas, F Lin, MC Dulik… - Frontiers in …, 2020 - frontiersin.org
Powerful, recent advances in technologies to analyze the genome have had a profound
impact on the practice of medical genetics, both in the laboratory and in the clinic. Increasing …

Rare coding variation illuminates the allelic architecture, risk genes, cellular expression patterns, and phenotypic context of autism

JM Fu, FK Satterstrom, M Peng, H Brand, RL Collins… - MedRxiv, 2021 - medrxiv.org
Individuals with autism spectrum disorder (ASD) or related neurodevelopmental disorders
(NDDs) often carry disruptive mutations in genes that are depleted of functional variation in …

[HTML][HTML] Interpreting the impact of noncoding structural variation in neurodevelopmental disorders

E D'haene, S Vergult - Genetics in Medicine, 2021 - Elsevier
The emergence of novel sequencing technologies has greatly improved the identification of
structural variation, revealing that a human genome harbors tens of thousands of structural …