Progress in top-down proteomics and the analysis of proteoforms

TK Toby, L Fornelli, NL Kelleher - Annual review of analytical …, 2016 - annualreviews.org
From a molecular perspective, enactors of function in biology are intact proteins that can be
variably modified at the genetic, transcriptional, or post-translational level. Over the past 30 …

Towards higher sensitivity of mass spectrometry: a perspective from the mass analyzers

C Li, S Chu, S Tan, X Yin, Y Jiang, X Dai… - Frontiers in …, 2021 - frontiersin.org
Mass spectrometry (MS) is one of the most widely used analytical techniques in many fields.
Recent developments in chemical and biological researches have drawn much attention to …

Parallelized acquisition of orbitrap and astral analyzers enables high-throughput quantitative analysis

HI Stewart, D Grinfeld, A Giannakopulos… - Analytical …, 2023 - ACS Publications
The growing trend toward high-throughput proteomics demands rapid liquid
chromatography–mass spectrometry (LC–MS) cycles that limit the available time to gather …

A compact quadrupole-orbitrap mass spectrometer with FAIMS interface improves proteome coverage in short LC gradients

DB Bekker-Jensen, A Martínez-Val… - Molecular & Cellular …, 2020 - ASBMB
State-of-the-art proteomics-grade mass spectrometers can measure peptide precursors and
their fragments with ppm mass accuracy at sequencing speeds of tens of peptides per …

Challenges and emergent solutions for LC‐MS/MS based untargeted metabolomics in diseases

L Cui, H Lu, YH Lee - Mass spectrometry reviews, 2018 - Wiley Online Library
In the past decade, advances in liquid chromatography‐mass spectrometry (LC‐MS) have
revolutionized untargeted metabolomics analyses. By mining metabolomes more deeply …

[HTML][HTML] Cross-linking mass spectrometry (XL-MS): An emerging technology for interactomics and structural biology

C Yu, L Huang - Analytical chemistry, 2018 - ncbi.nlm.nih.gov
Protein-protein interactions are fundamental to the formation of intricate interaction networks
and the assembly of multisubunit protein complexes that represent the functional …

A novel mechanism of host-pathogen interaction through sRNA in bacterial outer membrane vesicles

K Koeppen, TH Hampton, M Jarek, M Scharfe… - PLoS …, 2016 - journals.plos.org
Bacterial outer membrane vesicle (OMV)-mediated delivery of proteins to host cells is an
important mechanism of host-pathogen communication. Emerging evidence suggests that …

Optimal Dissociation Methods Differ for N- and O-Glycopeptides

NM Riley, SA Malaker, MD Driessen… - Journal of proteome …, 2020 - ACS Publications
Site-specific characterization of glycosylation requires intact glycopeptide analysis, and
recent efforts have focused on how to best interrogate glycopeptides using tandem mass …

Evolution of orbitrap mass spectrometry instrumentation

S Eliuk, A Makarov - Annual review of analytical chemistry, 2015 - annualreviews.org
We discuss the evolution of OrbitrapTM mass spectrometry (MS) from its birth in the late
1990s to its current role as one of the most prominent techniques for MS. The Orbitrap mass …

Benchmarking common quantification strategies for large-scale phosphoproteomics

A Hogrebe, L von Stechow, DB Bekker-Jensen… - Nature …, 2018 - nature.com
Comprehensive mass spectrometry (MS)-based proteomics is now feasible, but
reproducible quantification remains challenging, especially for post-translational …