Molecular recognition in chemical and biological systems

E Persch, O Dumele, F Diederich - … Chemie International Edition, 2015 - Wiley Online Library
Abstract Structure‐based ligand design in medicinal chemistry and crop protection relies on
the identification and quantification of weak noncovalent interactions and understanding the …

Virtual screening of chemical libraries

BK Shoichet - Nature, 2004 - nature.com
Virtual screening uses computer-based methods to discover new ligands on the basis of
biological structures. Although widely heralded in the 1970s and 1980s, the technique has …

Docking screens for novel ligands conferring new biology: Miniperspective

JJ Irwin, BK Shoichet - Journal of medicinal chemistry, 2016 - ACS Publications
It is now plausible to dock libraries of 10 million molecules against targets over several days
or weeks. When the molecules screened are commercially available, they may be rapidly …

Lead discovery using molecular docking

BK Shoichet, SL McGovern, B Wei, JJ Irwin - Current opinion in chemical …, 2002 - Elsevier
As the structures of more and more proteins and nucleic acids become available, molecular
docking is increasingly considered for lead discovery. Recent studies consider the hit-rate …

Recent developments in fragment-based drug discovery

M Congreve, G Chessari, D Tisi… - Journal of medicinal …, 2008 - ACS Publications
The field of fragment-based drug discovery (FBDDa) has developed significantly over the
past 10 years and is now recognized as a tangible alternative to more traditional methods of …

Functions of bacterial tRNA modifications: from ubiquity to diversity

V de Crécy-Lagard, M Jaroch - Trends in Microbiology, 2021 - cell.com
Modified nucleotides in tRNA are critical components of the translation apparatus, but their
importance in the process of translational regulation had until recently been greatly …

Structure and function of noncanonical nucleobases

T Carell, C Brandmayr, A Hienzsch… - Angewandte Chemie …, 2012 - Wiley Online Library
DNA and RNA contain, next to the four canonical nucleobases, a number of modified
nucleosides that extend their chemical information content. RNA is particularly rich in …

A model binding site for testing scoring functions in molecular docking

BQ Wei, WA Baase, LH Weaver, BW Matthews… - Journal of Molecular …, 2002 - Elsevier
Prediction of interaction energies between ligands and their receptors remains a major
challenge for structure-based inhibitor discovery. Much effort has been devoted to …

Docking screens: right for the right reasons?

P Kolb, JJ Irwin - Current topics in medicinal chemistry, 2009 - ingentaconnect.com
Whereas docking screens have emerged as the most practical way to use protein structure
for ligand discovery, an inconsistent track record raises questions about how well docking …

Computational approaches for fragment-based and de novo design

K Loving, I Alberts, W Sherman - Current topics in medicinal …, 2010 - ingentaconnect.com
Fragment-based and de novo design strategies have been used in drug discovery for years.
The methodologies for these strategies are typically discussed separately, yet the …