Reconstructing complex regions of genomes using long-read sequencing technology

J Huddleston, S Ranade, M Malig, F Antonacci… - Genome …, 2014 - genome.cshlp.org
Obtaining high-quality sequence continuity of complex regions of recent segmental
duplication remains one of the major challenges of finishing genome assemblies. In the …

New insights into the performance of human whole-exome capture platforms

J Meienberg, K Zerjavic, I Keller… - Nucleic acids …, 2015 - academic.oup.com
Whole exome sequencing (WES) is increasingly used in research and diagnostics. WES
users expect coverage of the entire coding region of known genes as well as sufficient read …

Detecting copy number variation via next generation technology

H Mason-Suares, L Landry, MS Lebo - Current Genetic Medicine Reports, 2016 - Springer
Abstract Purpose of Review Copy number variants (CNVs), gains and losses of segments of
genomic DNA associated with normal phenotypic variation and disease states, are …

Comprehensive Mutation Analysis of PMS2 in a Large Cohort of Probands Suspected of Lynch Syndrome or Constitutional Mismatch Repair Deficiency Syndrome

HM van der Klift, AR Mensenkamp, M Drost… - Human …, 2016 - Wiley Online Library
Monoallelic PMS2 germline mutations cause 5%–15% of Lynch syndrome, a midlife cancer
predisposition, whereas biallelic PMS2 mutations cause approximately 60% of constitutional …

Complete Genome Sequence and Comparative Analysis of Synechococcus sp. CS-601 (SynAce01), a Cold-Adapted Cyanobacterium from an Oligotrophic Antarctic …

J Tang, LM Du, YM Liang, M Daroch - International Journal of Molecular …, 2019 - mdpi.com
Marine picocyanobacteria belonging to Synechococcus are major contributors to the global
carbon cycle, however the genomic information of its cold-adapted members has been …

Systems and methods for detecting structural variants

R Gottimukkala, F Hyland, S Utiramerur… - US Patent …, 2018 - Google Patents
Abstract Systems and method for identifying long deletions can obtain sequencing
information for a plurality of amplicons in and around a potential region from a nucleic acid …

Detection and screening of chromosomal rearrangements in uterine leiomyomas by long‐distance inverse PCR

B Pradhan, N Sarvilinna, J Matilainen… - Genes …, 2016 - Wiley Online Library
Genome instability is a hallmark of many tumors and recently, next‐generation sequencing
methods have enabled analyses of tumor genomes at an unprecedented level. Studying …

Scalable cloud-based data analysis software systems for big data from next generation sequencing

M Szczerba, MS Wiewiórka, MJ Okoniewski… - Big Data Analysis: New …, 2016 - Springer
Next generation sequencing (NGS) technology has become a serious computational
challenge since its commercial introduction in 2008. Currently, thousands of machines …

DNA in Neoplastic Disease Diagnosis

EQ Konnick, CCS Yeung, D Wu - Translational Medicine: Cancer …, 2016 - books.google.com
A polymer of monosaccharides with a phosphate group and one of several
nitrogencontaining, complementary nucleobases. The monosaccharides polymerize to form …

Systems and methods for detecting structural variants

R Gottimukkala, F Hyland, S Utiramerur… - US Patent …, 2021 - Google Patents
Systems and method for identifying long deletions can obtain sequencing information for a
plurality of amplicons in and around a potential region from a nucleic acid sample. The …