Plant genome sequence assembly in the era of long reads: Progress, challenges and future directions
Third-generation long-read sequencing is transforming plant genomics. Oxford Nanopore
Technologies and Pacific Biosciences are offering competing long-read sequencing …
Technologies and Pacific Biosciences are offering competing long-read sequencing …
The potential role of clinical metagenomics in infectious diseases: therapeutic perspectives
Clinical metagenomics (CMg) is the process of sequencing nucleic acid of clinical samples
to obtain clinically relevant information such as the identification of microorganisms and their …
to obtain clinically relevant information such as the identification of microorganisms and their …
Self-inactivating, all-in-one AAV vectors for precision Cas9 genome editing via homology-directed repair in vivo
Adeno-associated virus (AAV) vectors are important delivery platforms for therapeutic
genome editing but are severely constrained by cargo limits. Simultaneous delivery of …
genome editing but are severely constrained by cargo limits. Simultaneous delivery of …
Inadvertent human genomic bycatch and intentional capture raise beneficial applications and ethical concerns with environmental DNA
The field of environmental DNA (eDNA) is advancing rapidly, yet human eDNA applications
remain underutilized and underconsidered. Broader adoption of eDNA analysis will produce …
remain underutilized and underconsidered. Broader adoption of eDNA analysis will produce …
Galaxy Training: A powerful framework for teaching!
S Hiltemann, H Rasche, S Gladman… - PLoS computational …, 2023 - journals.plos.org
There is an ongoing explosion of scientific datasets being generated, brought on by recent
technological advances in many areas of the natural sciences. As a result, the life sciences …
technological advances in many areas of the natural sciences. As a result, the life sciences …
Fieldable environmental DNA sequencing to assess jellyfish biodiversity in nearshore waters of the Florida Keys, United States
Recent advances in molecular sequencing technology and the increased availability of
fieldable laboratory equipment have provided researchers with the opportunity to conduct …
fieldable laboratory equipment have provided researchers with the opportunity to conduct …
[HTML][HTML] Antibiotic resistance: time of synthesis in a post-genomic age
Antibiotic resistance has been highlighted by international organizations, including World
Health Organization, World Bank and United Nations, as one of the most relevant global …
Health Organization, World Bank and United Nations, as one of the most relevant global …
The Galaxy platform for accessible, reproducible, and collaborative data analyses: 2024 update
Nucleic Acids Research, 2024 - academic.oup.com
Abstract Galaxy (https://galaxyproject. org) is deployed globally, predominantly through free-
to-use services, supporting user-driven research that broadens in scope each year. Users …
to-use services, supporting user-driven research that broadens in scope each year. Users …
Metagenomics of culture isolates and insect tissue illuminate the evolution of Wolbachia, Rickettsia and Bartonella symbionts in Ctenocephalides spp. fleas
While fleas are often perceived simply as a biting nuisance and a cause of allergic
dermatitis, they represent important disease vectors worldwide, especially for bacterial …
dermatitis, they represent important disease vectors worldwide, especially for bacterial …
A novel eDNA approach for rare species monitoring: Application of long-read shotgun sequencing to Lynx rufus soil pawprints
SA Koda, M McCauley, JA Farrell, IJ Duffy… - Biological …, 2023 - Elsevier
Environmental DNA (eDNA) sampling is a relatively new technique that has been employed
in biodiversity surveys around the world. Environmental DNA can be an effective, non …
in biodiversity surveys around the world. Environmental DNA can be an effective, non …