Future systems and control research in synthetic biology

D Del Vecchio, Y Qian, RM Murray, ED Sontag - Annual Reviews in Control, 2018 - Elsevier
Synthetic biology is the application of engineering principles to the fundamental components
of biology, with the aim of creating systems with novel functionalities that can be used for …

[HTML][HTML] Noise in biomolecular systems: Modeling, analysis, and control implications

C Briat, M Khammash - Annual Review of Control, Robotics, and …, 2023 - annualreviews.org
While noise is generally associated with uncertainties and often has a negative connotation
in engineering, living organisms have evolved to adapt to (and even exploit) such …

[HTML][HTML] Characterization and mitigation of gene expression burden in mammalian cells

T Frei, F Cella, F Tedeschi, J Gutiérrez, GB Stan… - Nature …, 2020 - nature.com
Despite recent advances in circuit engineering, the design of genetic networks in
mammalian cells is still painstakingly slow and fraught with inexplicable failures. Here, we …

[HTML][HTML] Sources, propagation and consequences of stochasticity in cellular growth

P Thomas, G Terradot, V Danos, AY Weiße - Nature communications, 2018 - nature.com
Growth impacts a range of phenotypic responses. Identifying the sources of growth variation
and their propagation across the cellular machinery can thus unravel mechanisms that …

A Miniaturized Escherichia coli Green Light Sensor with High Dynamic Range

NT Ong, JJ Tabor - ChemBioChem, 2018 - Wiley Online Library
Genetically engineered photoreceptors enable unrivaled control over gene expression.
Previously, we ported the Synechocystis PCC 6803 CcaSR two‐component system, which is …

Engineering an E. coli Near-Infrared Light Sensor

NT Ong, EJ Olson, JJ Tabor - ACS synthetic biology, 2018 - ACS Publications
Optogenetics is a technology wherein researchers combine light and genetically engineered
photoreceptors to control biological processes with unrivaled precision. Near-infrared (NIR) …

[HTML][HTML] Adaptive circuits in synthetic biology

T Frei, M Khammash - Current Opinion in Systems Biology, 2021 - Elsevier
One of the most remarkable features of biological systems is their ability to adapt to the
constantly changing environment. By harnessing principles of control theory, synthetic …

Genetic circuit-assisted smart microbial engineering

C Gao, P Xu, C Ye, X Chen, L Liu - Trends in microbiology, 2019 - cell.com
Rapid advances in DNA synthesis, genetic manipulation, and biosensors have greatly
improved the ability to engineer microorganisms with complex functions. By accurately …

Multiscale effects of heating and cooling on genes and gene networks

DA Charlebois, K Hauser… - Proceedings of the …, 2018 - National Acad Sciences
Most organisms must cope with temperature changes. This involves genes and gene
networks both as subjects and agents of cellular protection, creating difficulties in …

Making sense of snapshot data: ergodic principle for clonal cell populations

P Thomas - Journal of The Royal Society Interface, 2017 - royalsocietypublishing.org
Population growth is often ignored when quantifying gene expression levels across clonal
cell populations. We develop a framework for obtaining the molecule number distributions in …