Vibrational spectroscopic map, vibrational spectroscopy, and intermolecular interaction

CR Baiz, B Błasiak, J Bredenbeck, M Cho… - Chemical …, 2020 - ACS Publications
Vibrational spectroscopy is an essential tool in chemical analyses, biological assays, and
studies of functional materials. Over the past decade, various coherent nonlinear vibrational …

Advances, Applications, and Perspectives in Small‐Angle X‐ray Scattering of RNA

JN Tants, A Schlundt - Chembiochem, 2023 - Wiley Online Library
RNAs exhibit a plethora of functions far beyond transmitting genetic information. Often, RNA
functions are entailed in their structure, be it as a regulatory switch, protein binding site, or …

Probing the local structure and dynamics of nucleotides using vibrationally enhanced alkynyl stretching

T Dong, P Yu, J Zhao, J Wang - Physical Chemistry Chemical Physics, 2022 - pubs.rsc.org
Monitoring the site-specific local structure and dynamics of polynucleotides and DNA is
important for understanding their biological functions. However, structurally characterizing …

[HTML][HTML] The mutual interactions of RNA, counterions and water–quantifying the electrostatics at the phosphate–water interface

BP Fingerhut - Chemical Communications, 2021 - pubs.rsc.org
The structure and dynamics of polyanionic biomolecules, like RNA, are decisively
determined by their electric interactions with the water molecules and the counterions in the …

Sequence-Dependent Melting and Refolding Dynamics of RNA UNCG Tetraloops Using Temperature-Jump/Drop Infrared Spectroscopy

CP Howe, GM Greetham, B Procacci… - The Journal of …, 2023 - ACS Publications
Time-resolved temperature-jump/drop infrared (IR) spectroscopy has been used to measure
the impact of stem base sequence on the melting and refolding dynamics of ribonucleic acid …

2D-IR spectroscopy of carbohydrates: Characterization of thiocyanate-labeled β-glucose in CHCl3 and H2O

P Gasse, T Stensitzki, Y Mai-Linde, T Linker… - The Journal of …, 2023 - pubs.aip.org
Carbohydrates constitute one of the four key classes of biomacromolecules but have not
been studied by 2D-IR spectroscopy so far. Similarly as for proteins, a lack of native …

Protein dynamics by two-dimensional infrared spectroscopy

GW Tumbic, MY Hossan… - Annual Review of …, 2021 - annualreviews.org
Proteins function as ensembles of interconverting structures. The motions span from
picosecond bond rotations to millisecond and longer subunit displacements …

Contact ion pairs of phosphate groups in water: two-dimensional infrared spectroscopy of dimethyl phosphate and ab initio simulations

J Schauss, A Kundu, BP Fingerhut… - The Journal of Physical …, 2019 - ACS Publications
The interaction of phosphate groups with ions in an aqueous environment has a strong
impact on the structure and folding processes of DNA and RNA. The dynamic variety of ionic …

Measuring RNA UNCG Tetraloop Refolding Dynamics Using Temperature-Jump/Drop Infrared Spectroscopy

CP Howe, GM Greetham, B Procacci… - The Journal of …, 2022 - ACS Publications
Determining the structural dynamics of RNA and DNA is essential to understanding their
cellular function, but direct measurement of strand association or folding remains …

Phosphate–Magnesium Ion Interactions in Water Probed by Ultrafast Two-Dimensional Infrared Spectroscopy

J Schauss, F Dahms, BP Fingerhut… - The Journal of Physical …, 2019 - ACS Publications
Electric interactions between ions and ionic molecular groups in aqueous solution play a
fundamental role in chemistry and biology. While Mg2+ ions are known to strongly affect the …