Proteogenomic data and resources for pan-cancer analysis

Y Li, Y Dou, FDV Leprevost, Y Geffen, AP Calinawan… - Cancer cell, 2023 - cell.com
Summary The National Cancer Institute's Clinical Proteomic Tumor Analysis Consortium
(CPTAC) investigates tumors from a proteogenomic perspective, creating rich multi-omics …

mRNAs, proteins and the emerging principles of gene expression control

C Buccitelli, M Selbach - Nature Reviews Genetics, 2020 - nature.com
Gene expression involves transcription, translation and the turnover of mRNAs and proteins.
The degree to which protein abundances scale with mRNA levels and the implications in …

A deep proteome and transcriptome abundance atlas of 29 healthy human tissues

D Wang, B Eraslan, T Wieland, B Hallström… - Molecular systems …, 2019 - embopress.org
Abstract Genome‐, transcriptome‐and proteome‐wide measurements provide insights into
how biological systems are regulated. However, fundamental aspects relating to which …

Multi-omic measurements of heterogeneity in HeLa cells across laboratories

Y Liu, Y Mi, T Mueller, S Kreibich, EG Williams… - Nature …, 2019 - nature.com
Reproducibility in research can be compromised by both biological and technical variation,
but most of the focus is on removing the latter. Here we investigate the effects of biological …

A high-stringency blueprint of the human proteome

S Adhikari, EC Nice, EW Deutsch, L Lane… - Nature …, 2020 - nature.com
Abstract The Human Proteome Organization (HUPO) launched the Human Proteome Project
(HPP) in 2010, creating an international framework for global collaboration, data sharing …

Heterogeneity and specialized functions of translation machinery: from genes to organisms

NR Genuth, M Barna - Nature Reviews Genetics, 2018 - nature.com
Regulation of mRNA translation offers the opportunity to diversify the expression and
abundance of proteins made from individual gene products in cells, tissues and organisms …

The human plasma proteome draft of 2017: building on the human plasma PeptideAtlas from mass spectrometry and complementary assays

JM Schwenk, GS Omenn, Z Sun… - Journal of proteome …, 2017 - ACS Publications
Human blood plasma provides a highly accessible window to the proteome of any individual
in health and disease. Since its inception in 2002, the Human Proteome Organization's …

Co-regulation map of the human proteome enables identification of protein functions

G Kustatscher, P Grabowski, TA Schrader… - Nature …, 2019 - nature.com
Assigning functions to the vast array of proteins present in eukaryotic cells remains
challenging. To identify relationships between proteins, and thereby enable functional …

A molecular quantitative trait locus map for osteoarthritis

J Steinberg, L Southam, TI Roumeliotis… - Nature …, 2021 - nature.com
Osteoarthritis causes pain and functional disability for over 500 million people worldwide. To
develop disease-stratifying tools and modifying therapies, we need a better understanding …

[HTML][HTML] Targeting human leukocyte antigen G with chimeric antigen receptors of natural killer cells convert immunosuppression to ablate solid tumors

CI Jan, SW Huang, P Canoll, JN Bruce… - … for ImmunoTherapy of …, 2021 - ncbi.nlm.nih.gov
Background Immunotherapy against solid tumors has long been hampered by the
development of immunosuppressive tumor microenvironment, and the lack of a specific …