STRAIGHT-IN: a platform for rapidly generating panels of genetically modified human pluripotent stem cell lines

A Blanch-Asensio, C Grandela, CL Mummery… - Nature …, 2024 - nature.com
Targeted integration of large DNA cargoes (> 10 kb) or genomic replacements in
mammalian cells, such as human pluripotent stem cells (hPS cells), remains challenging …

Transcriptional and post-transcriptional controls for tuning gene expression in plants

V Zhong, BN Archibald, JAN Brophy - Current Opinion in Plant Biology, 2023 - Elsevier
Plant biotechnologists seek to modify plants through genetic reprogramming, but our ability
to precisely control gene expression in plants is still limited. Here, we review transcription …

Single-molecule visualization of twin-supercoiled domains generated during transcription

R Janissen, R Barth, M Polinder… - Nucleic acids …, 2024 - academic.oup.com
Transcription-coupled supercoiling of DNA is a key factor in chromosome compaction and
the regulation of genetic processes in all domains of life. It has become common knowledge …

Nucleosomes play a dual role in regulating transcription dynamics

S Brahmachari, S Tripathi, JN Onuchic… - Proceedings of the …, 2024 - pnas.org
Transcription has a mechanical component, as the translocation of the transcription
machinery or RNA polymerase (RNAP) on DNA or chromatin is dynamically coupled to the …

Engineering the Biosynthesis of Late-Stage Vinblastine Precursors Precondylocarpine Acetate, Catharanthine, Tabersonine in Nicotiana benthamiana

D Grzech, B Hong, L Caputi, PD Sonawane… - ACS Synthetic …, 2022 - ACS Publications
Vinblastine is a chemotherapy agent produced by the plant Catharanthus roseus in small
quantities. Currently, vinblastine is sourced by isolation or semisynthesis. Nicotiana …

RNA interacts with topoisomerase I to adjust DNA topology

M Bhola, K Abe, P Orozco, H Rahnamoun… - Molecular cell, 2024 - cell.com
Topoisomerase I (TOP1) is an essential enzyme that relaxes DNA to prevent and dissipate
torsional stress during transcription. However, the mechanisms underlying the regulation of …

[PDF][PDF] A synergistic, cultivator model of de novo gene origination

UJ Lee, SM Mozeika, L Zhao - Genome Biology and Evolution, 2024 - academic.oup.com
The origin and fixation of evolutionarily young genes is a fundamental question in
evolutionary biology. However, understanding the origins of newly evolved genes arising de …

[HTML][HTML] Context-dependent redesign of robust synthetic gene circuits

A Stone, A Youssef, S Rijal, R Zhang, XJ Tian - Trends in Biotechnology, 2024 - cell.com
Cells provide dynamic platforms for executing exogenous genetic programs in synthetic
biology, resulting in highly context-dependent circuit performance. Recent years have seen …

Enhancing circuit stability under growth feedback with supplementary repressive regulation

A Stone, S Rijal, R Zhang, XJ Tian - Nucleic acids research, 2024 - academic.oup.com
The field of synthetic biology and biosystems engineering increasingly acknowledges the
need for a holistic design approach that incorporates circuit-host interactions into the design …

Resource-aware construct design in mammalian cells

R Di Blasi, M Pisani, F Tedeschi, MM Marbiah… - Nature …, 2023 - nature.com
Resource competition can be the cause of unintended coupling between co-expressed
genetic constructs. Here we report the quantification of the resource load imposed by …