A survey of methods for 3D histology reconstruction

J Pichat, JE Iglesias, T Yousry, S Ourselin… - Medical image analysis, 2018 - Elsevier
Histology permits the observation of otherwise invisible structures of the internal topography
of a specimen. Although it enables the investigation of tissues at a cellular level, it is invasive …

Survey of non-rigid registration tools in medicine

AP Keszei, B Berkels, TM Deserno - Journal of digital imaging, 2017 - Springer
We catalogue available software solutions for non-rigid image registration to support
scientists in selecting suitable tools for specific medical registration purposes. Registration …

Smart Align—a new tool for robust non-rigid registration of scanning microscope data

L Jones, H Yang, TJ Pennycook, MSJ Marshall… - Advanced Structural and …, 2015 - Springer
Many microscopic investigations of materials may benefit from the recording of multiple
successive images. This can include techniques common to several types of microscopy …

Is synthesizing MRI contrast useful for inter-modality analysis?

JE Iglesias, E Konukoglu, D Zikic, B Glocker… - … Image Computing and …, 2013 - Springer
Availability of multi-modal magnetic resonance imaging (MRI) databases opens up the
opportunity to synthesize different MRI contrasts without actually acquiring the images. In …

Co-registration and distortion correction of diffusion and anatomical images based on inverse contrast normalization

C Bhushan, JP Haldar, S Choi, AA Joshi, DW Shattuck… - Neuroimage, 2015 - Elsevier
Diffusion MRI provides quantitative information about microstructural properties which can
be useful in neuroimaging studies of the human brain. Echo planar imaging (EPI) …

Real-time in vivo two-photon imaging study reveals decreased cerebro-vascular volume and increased blood-brain barrier permeability in chronically stressed mice

S Lee, BM Kang, JH Kim, J Min, HS Kim, H Ryu… - Scientific reports, 2018 - nature.com
Chronic stress disrupts brain homeostasis and adversely affects the cerebro-vascular
system. Even though the effects of chronic stress on brain system have been extensively …

Modality propagation: coherent synthesis of subject-specific scans with data-driven regularization

DH Ye, D Zikic, B Glocker, A Criminisi… - … Image Computing and …, 2013 - Springer
We propose a general database-driven framework for coherent synthesis of subject-specific
scans of desired modality, which adopts and generalizes the patch-based label propagation …

Alzheimer's disease classification based on combination of multi-model convolutional networks

F Li, D Cheng, M Liu - … on imaging systems and techniques (IST …, 2017 - ieeexplore.ieee.org
Alzheimer's disease (AD) is an irreversible neurodegenerative disorder with progressive
impairment of memory and cognitive functions. It brings increasingly troubling in today's …

Cross-modality image synthesis via weakly coupled and geometry co-regularized joint dictionary learning

Y Huang, L Shao, AF Frangi - IEEE transactions on medical …, 2017 - ieeexplore.ieee.org
Multi-modality medical imaging is increasingly used for comprehensive assessment of
complex diseases in either diagnostic examinations or as part of medical research trials …

Extending two-dimensional histology into the third dimension through conventional micro computed tomography

A Khimchenko, H Deyhle, G Schulz, G Schweighauser… - NeuroImage, 2016 - Elsevier
Histological examination achieves sub-micrometer resolution laterally. In the third
dimension, however, resolution is limited to section thickness. In addition, histological …