[HTML][HTML] T-cell repertoire analysis and metrics of diversity and clonality

J Chiffelle, R Genolet, MAS Perez, G Coukos… - Current opinion in …, 2020 - Elsevier
Highlights•Immune fitness in health and disease depends notably on the diversity of cellular
repertoires.•Single-cell sequencing is fostering the understanding of clonal diversity of T-cell …

[HTML][HTML] Individual HLA heterogeneity and its implications for cellular immune evasion in cancer and beyond

S Pagliuca, C Gurnari, MT Rubio, V Visconte… - Frontiers in …, 2022 - frontiersin.org
Structural and functional variability of human leukocyte antigen (HLA) is the foundation for
competent adaptive immune responses against pathogen and tumor antigens as it assures …

Deep learning-based prediction of the T cell receptor–antigen binding specificity

T Lu, Z Zhang, J Zhu, Y Wang, P Jiang, X Xiao… - Nature machine …, 2021 - nature.com
Neoantigens play a key role in the recognition of tumour cells by T cells; however, only a
small proportion of neoantigens truly elicit T-cell responses, and few clues exist as to which …

[HTML][HTML] Hotspot autoimmune T cell receptor binding underlies pathogen and insulin peptide cross-reactivity

DK Cole, AM Bulek, G Dolton… - The Journal of …, 2016 - Am Soc Clin Investig
The cross-reactivity of T cells with pathogen-and self-derived peptides has been implicated
as a pathway involved in the development of autoimmunity. However, the mechanisms that …

[HTML][HTML] Quantitative prediction of the landscape of T cell epitope immunogenicity in sequence space

M Ogishi, H Yotsuyanagi - Frontiers in Immunology, 2019 - frontiersin.org
Immunodominant T cell epitopes preferentially targeted in multiple individuals are the critical
element of successful vaccines and targeted immunotherapies. However, the underlying …

[HTML][HTML] Predicting cross-reactivity and antigen specificity of T cell receptors

CH Lee, M Salio, G Napolitani, G Ogg… - Frontiers in …, 2020 - frontiersin.org
Adaptive immune recognition is mediated by specific interactions between heterodimeric T
cell receptors (TCRs) and their cognate peptide-MHC (pMHC) ligands, and the methods to …

[HTML][HTML] Specificity of bispecific T cell receptors and antibodies targeting peptide-HLA

CJ Holland, RM Crean, JM Pentier… - The Journal of …, 2020 - Am Soc Clin Investig
Tumor-associated peptide–human leukocyte antigen complexes (pHLAs) represent the
largest pool of cell surface–expressed cancer-specific epitopes, making them attractive …

[HTML][HTML] Comparative analysis of the CDR loops of antigen receptors

WK Wong, J Leem, CM Deane - Frontiers in immunology, 2019 - frontiersin.org
The adaptive immune system uses two main types of antigen receptors: T-cell receptors
(TCRs) and antibodies. While both proteins share a globally similar β-sandwich architecture …

[HTML][HTML] Direct molecular mimicry enables off-target cardiovascular toxicity by an enhanced affinity TCR designed for cancer immunotherapy

MCC Raman, PJ Rizkallah, R Simmons, Z Donnellan… - Scientific reports, 2016 - nature.com
Natural T-cell responses generally lack the potency to eradicate cancer. Enhanced affinity T-
cell receptors (TCRs) provide an ideal approach to target cancer cells, with emerging clinical …

Neoepitopes as cancer immunotherapy targets: key challenges and opportunities

CA Brennick, MM George, WL Corwin… - …, 2017 - Taylor & Francis
Over the last half century, it has become well established that cancers can elicit a host
immune response that can target them with high specificity. Only within the last decade, with …