PROTACs: past, present and future

K Li, CM Crews - Chemical Society Reviews, 2022 - pubs.rsc.org
Proteolysis-targeting chimeras (PROTACs) are heterobifunctional molecules consisting of
one ligand that binds to a protein of interest (POI) and another that can recruit an E3 …

Generative models for molecular discovery: Recent advances and challenges

C Bilodeau, W Jin, T Jaakkola… - Wiley …, 2022 - Wiley Online Library
Abstract Development of new products often relies on the discovery of novel molecules.
While conventional molecular design involves using human expertise to propose …

Equivariant 3D-conditional diffusion model for molecular linker design

I Igashov, H Stärk, C Vignac, A Schneuing… - Nature Machine …, 2024 - nature.com
Fragment-based drug discovery has been an effective paradigm in early-stage drug
development. An open challenge in this area is designing linkers between disconnected …

A 3D generative model for structure-based drug design

S Luo, J Guan, J Ma, J Peng - Advances in Neural …, 2021 - proceedings.neurips.cc
We study a fundamental problem in structure-based drug design---generating molecules
that bind to specific protein binding sites. While we have witnessed the great success of …

[HTML][HTML] De novo molecular design and generative models

J Meyers, B Fabian, N Brown - Drug discovery today, 2021 - Elsevier
Molecular design strategies are integral to therapeutic progress in drug discovery.
Computational approaches for de novo molecular design have been developed over the …

Generating 3D molecules conditional on receptor binding sites with deep generative models

M Ragoza, T Masuda, DR Koes - Chemical science, 2022 - pubs.rsc.org
The goal of structure-based drug discovery is to find small molecules that bind to a given
target protein. Deep learning has been used to generate drug-like molecules with certain …

Generative models for de novo drug design

X Tong, X Liu, X Tan, X Li, J Jiang, Z Xiong… - Journal of Medicinal …, 2021 - ACS Publications
Artificial intelligence (AI) is booming. Among various AI approaches, generative models
have received much attention in recent years. Inspired by these successes, researchers are …

[HTML][HTML] Current strategies for the design of PROTAC linkers: a critical review

RI Troup, C Fallan, MGJ Baud - Exploration of Targeted Anti-tumor …, 2020 - ncbi.nlm.nih.gov
Abstract PROteolysis TArgeting Chimeras (PROTACs) are heterobifunctional molecules
consisting of two ligands; an “anchor” to bind to an E3 ubiquitin ligase and a “warhead” to …

Application advances of deep learning methods for de novo drug design and molecular dynamics simulation

Q Bai, S Liu, Y Tian, T Xu… - Wiley …, 2022 - Wiley Online Library
De novo drug design is a stationary way to build novel ligands in the confined pocket of
receptor by assembling the atoms or fragments, while molecular dynamics (MD) simulation …

Generative deep learning for targeted compound design

T Sousa, J Correia, V Pereira… - Journal of chemical …, 2021 - ACS Publications
In the past few years, de novo molecular design has increasingly been using generative
models from the emergent field of Deep Learning, proposing novel compounds that are …