Finding the genomic basis of local adaptation: pitfalls, practical solutions, and future directions

S Hoban, JL Kelley, KE Lotterhos… - The American …, 2016 - journals.uchicago.edu
Uncovering the genetic and evolutionary basis of local adaptation is a major focus of
evolutionary biology. The recent development of cost-effective methods for obtaining high …

Detecting natural selection in genomic data

JJ Vitti, SR Grossman, PC Sabeti - Annual review of genetics, 2013 - annualreviews.org
The past fifty years have seen the development and application of numerous statistical
methods to identify genomic regions that appear to be shaped by natural selection. These …

[HTML][HTML] Integrating common and rare genetic variation in diverse human populations

International HapMap 3 Consortium - Nature, 2010 - ncbi.nlm.nih.gov
Despite great progress in identifying genetic variants that influence human disease, most
inherited risk remains unexplained. A more complete understanding requires genome-wide …

A map of recent positive selection in the human genome

BF Voight, S Kudaravalli, X Wen, JK Pritchard - PLoS biology, 2006 - journals.plos.org
The identification of signals of very recent positive selection provides information about the
adaptation of modern humans to local conditions. We report here on a genome-wide scan …

Signatures of environmental genetic adaptation pinpoint pathogens as the main selective pressure through human evolution

M Fumagalli, M Sironi, U Pozzoli… - PLoS …, 2011 - journals.plos.org
Previous genome-wide scans of positive natural selection in humans have identified a
number of non-neutrally evolving genes that play important roles in skin pigmentation …

Population differentiation as a test for selective sweeps

H Chen, N Patterson, D Reich - Genome research, 2010 - genome.cshlp.org
Selective sweeps can increase genetic differentiation among populations and cause allele
frequency spectra to depart from the expectation under neutrality. We present a likelihood …

On detecting incomplete soft or hard selective sweeps using haplotype structure

A Ferrer-Admetlla, M Liang… - Molecular biology …, 2014 - academic.oup.com
We present a new haplotype-based statistic (nS L) for detecting both soft and hard sweeps
in population genomic data from a single population. We compare our new method with …

Positive natural selection in the human lineage

PC Sabeti, SF Schaffner, B Fry, J Lohmueller, P Varilly… - science, 2006 - science.org
Positive natural selection is the force that drives the increase in prevalence of advantageous
traits, and it has played a central role in our development as a species. Until recently, the …

African genetic diversity: implications for human demographic history, modern human origins, and complex disease mapping

MC Campbell, SA Tishkoff - Annu. Rev. Genomics Hum. Genet., 2008 - annualreviews.org
Comparative studies of ethnically diverse human populations, particularly in Africa, are
important for reconstructing human evolutionary history and for understanding the genetic …

From evolutionary genetics to human immunology: how selection shapes host defence genes

LB Barreiro, L Quintana-Murci - Nature Reviews Genetics, 2010 - nature.com
Pathogens have always been a major cause of human mortality, so they impose strong
selective pressure on the human genome. Data from population genetic studies, including …