Evolution and phylogeny of microRNAs—protocols, pitfalls, and problems

CA Velandia-Huerto, AM Yazbeck, J Schor… - … : MicroRNA Biology and …, 2022 - Springer
MicroRNAs are important regulators in many eukaryotic lineages. Typical miRNAs have a
length of about 22nt and are processed from precursors that form a characteristic hairpin …

miRNAture—Computational Detection of microRNA Candidates

CA Velandia-Huerto, J Fallmann, PF Stadler - Genes, 2021 - mdpi.com
Homology-based annotation of short RNAs, including microRNAs, is a difficult problem
because their inherently small size limits the available information. Highly sensitive …

The Genome of the “Sea Vomit” Didemnum vexillum

E Parra-Rincón, CA Velandia-Huerto, A Gittenberger… - Life, 2021 - mdpi.com
Tunicates are the sister group of vertebrates and thus occupy a key position for
investigations into vertebrate innovations as well as into the consequences of the vertebrate …

[HTML][HTML] 羊传染性脓疱病毒感染山羊皮肤成纤维上皮细胞差异表达miRNA 分析

张大俊, 侯景, 申超超, 徐国伟, 孔汉金, 成伟伟… - 畜牧兽医学报, 2020 - html.rhhz.net
旨在研究羊传染性脓疱病毒(orf virus, orfv) 感染山羊皮肤成纤维细胞(goat skin fibroblasts cell,
GSF) 对GSF 细胞microRNA (miRNA) 表达谱影响, 探究miRNA 在orfv 感染过程中的作用及 …

A probabilistic version of Sankoff's maximum parsimony algorithm

G Balogh, SH Bernhart, PF Stadler… - Journal of bioinformatics …, 2020 - World Scientific
The number of genes belonging to a multi-gene family usually varies substantially over their
evolutionary history as a consequence of gene duplications and losses. A first step toward …

[PDF][PDF] Additional file# 1: The genome of the “Sea Vomit” Didemnum vexillum

E Parra-Rincón, CA Velandia-Huerto, A Gittenberger… - DNA - researchgate.net
Additional file #1: The genome of the “Sea Vomit” Didemnum vexillum Page 1 Additional file
#1: The genome of the “Sea Vomit” Didemnum vexillum Ernesto Parra-Rincón, Cristian A …

[PDF][PDF] Supplement to: miRNAture: Computational detection of microRNA candidates

CA Velandia-Huerto, J Fallmann, PF Stadler - Mammalia, 2021 - researchgate.net
Figure 1 depicts the processing steps performed by miRNAture by the blast homology mode
to generate extended regions. As an example, the detection of homologous candidates were …

[PDF][PDF] Additional information# 3: The genome of the “Sea Vomit” Didemnum vexillum

E Parra-Rincón, CA Velandia-Huerto, J Fallmann… - researchgate.net
Best hits were retrieved if they reported an identity≥ 80% and did not present gaps in the
alignment. With this strategy was detected a number of 526 species that reported high …

[PDF][PDF] Workflows for the Large-Scale Assessment of miRNA Evolution

CAV Huerto - 2019 - researchgate.net
As described over 20 years ago with the discovery of the RNA interference (RNAi), double-
stranded RNAs occupied key roles in regulation and as defense-line in animal cells. This …

[引用][C] Workflows for the Large-Scale Assessment of miRNA Evolution: Birth and Death of miRNA Genes in Tunicates

CA Velandia Huerto - 2019 - Dissertation, Leipzig, Universität …