A day in the life of the spliceosome

AG Matera, Z Wang - Nature reviews Molecular cell biology, 2014 - nature.com
One of the most amazing findings in molecular biology was the discovery that eukaryotic
genes are discontinuous, with coding DNA being interrupted by stretches of non-coding …

Nucleases: diversity of structure, function and mechanism

W Yang - Quarterly reviews of biophysics, 2011 - cambridge.org
Nucleases cleave the phosphodiester bonds of nucleic acids and may be endo or exo,
DNase or RNase, topoisomerases, recombinases, ribozymes, or RNA splicing enzymes. In …

Function of lncRNAs and approaches to lncRNA-protein interactions

JJ Zhu, HJ Fu, YG Wu, XF Zheng - Science China Life Sciences, 2013 - Springer
Long non-coding RNAs (lncRNAs), which represent a new frontier in molecular biology, play
important roles in regulating gene expression at epigenetic, transcriptional and post …

Maternally expressed gene 3 (MEG3) noncoding ribonucleic acid: isoform structure, expression, and functions

X Zhang, K Rice, Y Wang, W Chen, Y Zhong… - …, 2010 - academic.oup.com
Maternally expressed gene 3 (MEG3) is an imprinted gene highly expressed in the human
pituitary. However, MEG3 expression is lost in human gonadotroph-derived pituitary …

Potential in vivo roles of nucleic acid triple-helices

FA Buske, JS Mattick, TL Bailey - RNA biology, 2011 - Taylor & Francis
The ability of double-stranded DNA to form a triple-helical structure by hydrogen bonding
with a third strand is well established, but the biological functions of these structures remain …

Rise of the RNA machines: exploring the structure of long non-coding RNAs

IV Novikova, SP Hennelly, CS Tung… - Journal of molecular …, 2013 - Elsevier
Novel, profound and unexpected roles of long non-coding RNAs (lncRNAs) are emerging in
critical aspects of gene regulation. Thousands of lncRNAs have been recently discovered in …

A structural analysis of the group II intron active site and implications for the spliceosome

KS Keating, N Toor, PS Perlman, AM Pyle - Rna, 2010 - rnajournal.cshlp.org
Group II introns are self-splicing, mobile genetic elements that have fundamentally
influenced the organization of terrestrial genomes. These large ribozymes remain important …

The tertiary structure of group II introns: implications for biological function and evolution

AM Pyle - Critical reviews in biochemistry and molecular biology, 2010 - Taylor & Francis
Group II introns are some of the largest ribozymes in nature, and they are a major source of
information about RNA assembly and tertiary structural organization. These introns are of …

Exceptional structured noncoding RNAs revealed by bacterial metagenome analysis

Z Weinberg, J Perreault, MM Meyer, RR Breaker - Nature, 2009 - nature.com
Estimates of the total number of bacterial species,, indicate that existing DNA sequence
databases carry only a tiny fraction of the total amount of DNA sequence space represented …

Prp8, the pivotal protein of the spliceosomal catalytic center, evolved from a retroelement-encoded reverse transcriptase

M Dlakić, A Mushegian - Rna, 2011 - rnajournal.cshlp.org
Prp8 is the largest and most highly conserved protein of the spliceosome, encoded by all
sequenced eukaryotic genomes but missing from prokaryotes and viruses. Despite all …