FINDER: an automated software package to annotate eukaryotic genes from RNA-Seq data and associated protein sequences
Background Gene annotation in eukaryotes is a non-trivial task that requires meticulous
analysis of accumulated transcript data. Challenges include transcriptionally active regions …
analysis of accumulated transcript data. Challenges include transcriptionally active regions …
Combined population transcriptomic and genomic analysis reveals cis-regulatory differentiation of non-coding RNAs in maize
J Lu, S Zhen, J Zhang, Y Xie, C He, X Wang… - Theoretical and Applied …, 2023 - Springer
Key message Long intergenic non-coding RNA (lincRNA), cis-acting expression quantitative
trait locus (cis-eQTL), maize, regulatory evolution. Abstract The law of genetic variation …
trait locus (cis-eQTL), maize, regulatory evolution. Abstract The law of genetic variation …
Identification of gene regulatory networks from single-cell expression data
Single-cell RNAseq is an emerging technology that allows the quantification of gene
expression in individual cells. In plants, single-cell sequencing technology has been applied …
expression in individual cells. In plants, single-cell sequencing technology has been applied …
Genome-wide identification of barley long noncoding RNAs and analysis of their regulatory interactions during shoot and grain development
S Gasparis, M Przyborowski… - International Journal of …, 2021 - mdpi.com
Long noncoding RNAs (lncRNAs) are a class of RNA molecules with gene regulatory
functions in plant development and the stress response. Although the number of lncRNAs …
functions in plant development and the stress response. Although the number of lncRNAs …