Perturbations of native membrane protein structure in alkyl phosphocholine detergents: a critical assessment of NMR and biophysical studies

C Chipot, F Dehez, JR Schnell, N Zitzmann… - Chemical …, 2018 - ACS Publications
Membrane proteins perform a host of vital cellular functions. Deciphering the molecular
mechanisms whereby they fulfill these functions requires detailed biophysical and structural …

Molecular dynamics simulations of biological membranes and membrane proteins using enhanced conformational sampling algorithms

T Mori, N Miyashita, W Im, M Feig, Y Sugita - Biochimica et Biophysica Acta …, 2016 - Elsevier
This paper reviews various enhanced conformational sampling methods and explicit/implicit
solvent/membrane models, as well as their recent applications to the exploration of the …

Scaling protein–water interactions in the martini 3 coarse-grained force field to simulate transmembrane helix dimers in different lipid environments

A Claveras Cabezudo, C Athanasiou… - Journal of Chemical …, 2023 - ACS Publications
Martini 3, the latest version of the widely used Martini force field for coarse-grained
molecular dynamics simulations, is a promising tool to investigate proteins in phospholipid …

[HTML][HTML] Helix-helix interactions in membrane domains of bitopic proteins: Specificity and role of lipid environment

EV Bocharov, KS Mineev, KV Pavlov, SA Akimov… - … et Biophysica Acta (BBA …, 2017 - Elsevier
Interaction between transmembrane helices often determines biological activity of
membrane proteins. Bitopic proteins, a broad subclass of membrane proteins, form dimers …

[HTML][HTML] Hydrogen Bond Strengthens Acceptor Group: The Curious Case of the C–H··· O= C Bond

K Basu, ES Brielle, IT Arkin - International Journal of Molecular Sciences, 2024 - mdpi.com
An H-bond involves the sharing of a hydrogen atom between an electronegative atom to
which it is covalently bound (the donor) and another electronegative atom serving as an …

Heteromeric solute carriers: function, structure, pathology and pharmacology

SJ Fairweather, N Shah, S Brӧer - Protein Reviews: Volume 21, 2021 - Springer
Solute carriers form one of three major superfamilies of membrane transporters in humans,
and include uniporters, exchangers and symporters. Following several decades of …

Mcl-1 and Bok transmembrane domains: Unexpected players in the modulation of apoptosis

E Lucendo, M Sancho, F Lolicato… - Proceedings of the …, 2020 - National Acad Sciences
The Bcl-2 protein family comprises both pro-and antiapoptotic members that control the
permeabilization of the mitochondrial outer membrane, a crucial step in the modulation of …

Fake it 'till you make it—the pursuit of suitable membrane mimetics for membrane protein biophysics

J Thoma, BM Burmann - International journal of molecular sciences, 2020 - mdpi.com
Membrane proteins evolved to reside in the hydrophobic lipid bilayers of cellular
membranes. Therefore, membrane proteins bridge the different aqueous compartments …

Lipid concentration and molar ratio boundaries for the use of isotropic bicelles

M Beaugrand, AA Arnold, J Hénin, DE Warschawski… - Langmuir, 2014 - ACS Publications
Bicelles are model membranes generally made of long-chain
dimyristoylphosphatidylcholine (DMPC) and short-chain dihexanoyl-PC (DHPC). They are …

HER2 transmembrane domain dimerization coupled with self-association of membrane-embedded cytoplasmic juxtamembrane regions

PE Bragin, KS Mineev, OV Bocharova… - Journal of molecular …, 2016 - Elsevier
Receptor tyrosine kinases of the human epidermal growth factor receptor (HER or ErbB)
family transduce biochemical signals across plasma membrane, playing a significant role in …