Hallmarks of totipotent and pluripotent stem cell states

P Du, J Wu - Cell Stem Cell, 2024 - cell.com
Though totipotency and pluripotency are transient during early embryogenesis, they
establish the foundation for the development of all mammals. Studying these in vivo has …

Chromatin and epigenetic rearrangements in embryonic stem cell fate transitions

L Sun, X Fu, G Ma, AP Hutchins - Frontiers in cell and developmental …, 2021 - frontiersin.org
A major event in embryonic development is the rearrangement of epigenetic information as
the somatic genome is reprogrammed for a new round of organismal development …

Simultaneous single-cell analysis of 5mC and 5hmC with SIMPLE-seq

D Bai, X Zhang, H Xiang, Z Guo, C Zhu, C Yi - Nature Biotechnology, 2024 - nature.com
Abstract Dynamic 5-methylcytosine (5mC) and 5-hydroxymethylcytosine (5hmC)
modifications to DNA regulate gene expression in a cell-type-specific manner and are …

Dynamic enhancer DNA methylation as basis for transcriptional and cellular heterogeneity of ESCs

Y Song, PR van den Berg, S Markoulaki, F Soldner… - Molecular cell, 2019 - cell.com
Variable levels of DNA methylation have been reported at tissue-specific differential
methylation regions (DMRs) overlapping enhancers, including super-enhancers (SEs) …

Vimentin protects differentiating stem cells from stress

S Pattabiraman, GK Azad, T Amen, S Brielle, JE Park… - Scientific Reports, 2020 - nature.com
Vimentin is one of the first cytoplasmic intermediate filaments to be expressed in mammalian
cells during embryogenesis, but its role in cellular fitness has long been a mystery. Vimentin …

Global hyperactivation of enhancers stabilizes human and mouse naive pluripotency through inhibition of CDK8/19 Mediator kinases

CJ Lynch, R Bernad, A Martínez-Val, MN Shahbazi… - Nature Cell …, 2020 - nature.com
Pluripotent stem cells (PSCs) transition between cell states in vitro, reflecting developmental
changes in the early embryo. PSCs can be stabilized in the naive state by blocking …

Hypoxia-inducible factors promote breast cancer stem cell specification and maintenance in response to hypoxia or cytotoxic chemotherapy

L Xiang, GL Semenza - Advances in Cancer Research, 2019 - Elsevier
Clinical studies have revealed that breast cancers contain regions of intratumoral hypoxia
(reduced oxygen availability), which activates hypoxia-inducible factors (HIFs). The …

The role of α-ketoglutarate–dependent proteins in pluripotency acquisition and maintenance

KA Tran, CM Dillingham, R Sridharan - Journal of Biological Chemistry, 2019 - ASBMB
α-Ketoglutarate is an important metabolic intermediate that acts as a cofactor for several
chromatin-modifying enzymes, including histone demethylases and the Tet family of …

A microfluidic approach to rescue ALS motor neuron degeneration using rapamycin

P Chennampally, A Sayed-Zahid, P Soundararajan… - Scientific Reports, 2021 - nature.com
Abstract TAR DNA-binding protein-43 (TDP-43) is known to accumulate in ubiquitinated
inclusions of amyotrophic lateral sclerosis affected motor neurons, resulting in motor neuron …

Enhancer-associated H3K4 methylation safeguards in vitro germline competence

T Bleckwehl, G Crispatzu, K Schaaf, P Respuela… - Nature …, 2021 - nature.com
Germline specification in mammals occurs through an inductive process whereby competent
cells in the post-implantation epiblast differentiate into primordial germ cells (PGC). The …