The genetics of quantitative traits: challenges and prospects

TFC Mackay, EA Stone, JF Ayroles - Nature Reviews Genetics, 2009 - nature.com
A major challenge in current biology is to understand the genetic basis of variation for
quantitative traits. We review the principles of quantitative trait locus mapping and …

Behavior testing in rodents: highlighting potential confounds affecting variability and reproducibility

RM Saré, A Lemons, CB Smith - Brain sciences, 2021 - mdpi.com
Rodent models of brain disorders including neurodevelopmental, neuropsychiatric, and
neurodegenerative diseases are essential for increasing our understanding of underlying …

Genome-wide regression and prediction with the BGLR statistical package

P Pérez, G de Los Campos - Genetics, 2014 - academic.oup.com
Many modern genomic data analyses require implementing regressions where the number
of parameters (p, eg, the number of marker effects) exceeds sample size (n). Implementing …

Polygenic modeling with Bayesian sparse linear mixed models

X Zhou, P Carbonetto, M Stephens - PLoS genetics, 2013 - journals.plos.org
Both linear mixed models (LMMs) and sparse regression models are widely used in
genetics applications, including, recently, polygenic modeling in genome-wide association …

A mixed-model approach for genome-wide association studies of correlated traits in structured populations

A Korte, BJ Vilhjálmsson, V Segura, A Platt, Q Long… - Nature …, 2012 - nature.com
Genome-wide association studies (GWAS) are a standard approach for studying the
genetics of natural variation. A major concern in GWAS is the need to account for the …

Predicting quantitative traits with regression models for dense molecular markers and pedigree

G De Los Campos, H Naya, D Gianola, J Crossa… - Genetics, 2009 - academic.oup.com
The availability of genomewide dense markers brings opportunities and challenges to
breeding programs. An important question concerns the ways in which dense markers and …

Discovering susceptibility genes for asthma and allergy

D Vercelli - Nature reviews immunology, 2008 - nature.com
Asthma and asthma-related traits are complex diseases with strong genetic and
environmental components. Rapid progress in asthma genetics has led to the identification …

[HTML][HTML] Reproducibility and replicability of rodent phenotyping in preclinical studies

N Kafkafi, J Agassi, EJ Chesler, JC Crabbe… - Neuroscience & …, 2018 - Elsevier
The scientific community is increasingly concerned with the proportion of published
“discoveries” that are not replicated in subsequent studies. The field of rodent behavioral …

Performance of genomic selection in mice

A Legarra, C Robert-Granié, E Manfredi, JM Elsen - Genetics, 2008 - academic.oup.com
Selection plans in plant and animal breeding are driven by genetic evaluation. Recent
developments suggest using massive genetic marker information, known as “genomic …

Environmental standardization: cure or cause of poor reproducibility in animal experiments?

SH Richter, JP Garner, H Würbel - Nature methods, 2009 - nature.com
It is widely believed that environmental standardization is the best way to guarantee
reproducible results in animal experiments. However, mounting evidence indicates that …