Function of alternative splicing

O Kelemen, P Convertini, Z Zhang, Y Wen, M Shen… - Gene, 2013 - Elsevier
Almost all polymerase II transcripts undergo alternative pre-mRNA splicing. Here, we review
the functions of alternative splicing events that have been experimentally determined. The …

Human Splicing Finder: an online bioinformatics tool to predict splicing signals

FO Desmet, D Hamroun, M Lalande… - Nucleic acids …, 2009 - academic.oup.com
Thousands of mutations are identified yearly. Although many directly affect protein
expression, an increasing proportion of mutations is now believed to influence mRNA …

SpliceAid 2: a database of human splicing factors expression data and RNA target motifs

F Piva, M Giulietti, AB Burini, G Principato - Human mutation, 2012 - Wiley Online Library
Splicing is the most frequently altered biological process by mutations within gene regions.
Information for splicing is recognized by several factors that bind pre‐mRNA sequence and …

A general definition and nomenclature for alternative splicing events

M Sammeth, S Foissac, R Guigó - PLoS computational biology, 2008 - journals.plos.org
Understanding the molecular mechanisms responsible for the regulation of the
transcriptome present in eukaryotic cells is one of the most challenging tasks in the …

Mutation spectrum of the ABCA4 gene in 335 Stargardt disease patients from a multicenter German cohort—impact of selected deep intronic variants and common …

HL Schulz, F Grassmann, U Kellner… - … & visual science, 2017 - iovs.arvojournals.org
Purpose: Stargardt disease (STGD1) is an autosomal recessive retinopathy, caused by
mutations in the retina-specific ATP-binding cassette transporter (ABCA4) gene. To establish …

Alternative splicing for diseases, cancers, drugs, and databases

JY Tang, JC Lee, MF Hou, CL Wang… - The Scientific World …, 2013 - Wiley Online Library
Alternative splicing is a major diversification mechanism in the human transcriptome and
proteome. Several diseases, including cancers, have been associated with dysregulation of …

Genome sequence of the plant growth promoting endophytic yeast Rhodotorula graminis WP1

A Firrincieli, R Otillar, A Salamov, J Schmutz… - Frontiers in …, 2015 - frontiersin.org
Background Here we present the genome sequence of Rhodotorula graminis WP1, a pink-
pigmented, encapsulated yeast strain belonging to the Basidiomycota phylum that was …

[HTML][HTML] PlantSPEAD: a web resource towards comparatively analysing stress‐responsive expression of splicing‐related proteins in plant

MX Chen, LC Mei, F Wang… - Plant Biotechnology …, 2021 - ncbi.nlm.nih.gov
Alternative splicing (AS) enhances transcriptome plasticity and proteome diversity in
response to diverse growth and stress cues, which places AS at the crossroads of …

SpliceDisease database: linking RNA splicing and disease

J Wang, J Zhang, K Li, W Zhao, Q Cui - Nucleic acids research, 2012 - academic.oup.com
RNA splicing is an important aspect of gene regulation in many organisms. Splicing of RNA
is regulated by complicated mechanisms involving numerous RNA-binding proteins and the …

SpliceCenter: a suite of web-based bioinformatic applications for evaluating the impact of alternative splicing on RT-PCR, RNAi, microarray, and peptide-based …

MC Ryan, BR Zeeberg, NJ Caplen, JA Cleland… - BMC …, 2008 - Springer
Background Over 60% of protein-coding genes in vertebrates express mRNAs that undergo
alternative splicing. The resulting collection of transcript isoforms poses significant …