Causes of mutation rate variability in plant genomes

D Quiroz, M Lensink, DJ Kliebenstein… - Annual Review of …, 2023 - annualreviews.org
Mutation is the source of all heritable diversity, the essential material of evolution and
breeding. While mutation rates are often regarded as constant, variability in mutation rates …

Advances in cis-element- and natural variation-mediated transcriptional regulation and applications in gene editing of major crops

Y Cui, Q Cao, Y Li, M He, X Liu - Journal of Experimental Botany, 2023 - academic.oup.com
Transcriptional regulation is crucial to control of gene expression. Both spatio-temporal
expression patterns and expression levels of genes are determined by the interaction …

A chromosome‐level genome assembly of radish (Raphanus sativus L.) reveals insights into genome adaptation and differential bolting regulation

L Xu, Y Wang, J Dong, W Zhang, M Tang… - Plant Biotechnology …, 2023 - Wiley Online Library
High‐quality radish (Raphanus sativus) genome represents a valuable resource for
agronomical trait improvements and understanding genome evolution among Brassicaceae …

INSurVeyor: improving insertion calling from short read sequencing data

R Rajaby, DX Liu, CH Au, YT Cheung, AYT Lau… - Nature …, 2023 - nature.com
Insertions are one of the major types of structural variations and are defined as the addition
of 50 nucleotides or more into a DNA sequence. Several methods exist to detect insertions …

Genomic signatures of domestication in a fungus obligately farmed by leafcutter ants

CA Leal-Dutra, J Vizueta, T Baril… - Molecular Biology …, 2024 - academic.oup.com
The naturally selected fungal crop (Leucoagaricus gongylophorus) farmed by leafcutter ants
shows striking parallels with artificially selected plant crops domesticated by humans (eg …

A BrLINE1-RUP insertion in BrCER2 alters cuticular wax biosynthesis in Chinese cabbage (Brassica rapa L. ssp. pekinensis)

B Li, Z Yue, X Ding, Y Zhao, J Lei, Y Zang… - Frontiers in Plant …, 2023 - frontiersin.org
Glossiness is an important quality-related trait of Chinese cabbage, which is a leafy
vegetable crop in the family Brassicaceae. The glossy trait is caused by abnormal cuticular …

Smart breeding driven by advances in sequencing technology

C Zhang, S Jiang, Y Tian, X Dong, J Xiao… - Modern …, 2023 - Wiley Online Library
Crop breeding has undergone numerous advancements throughout history with the next
revolution being uncertain. This review provides an overview of breeding techniques from …

Genome-wide analysis of transposable elements and satellite DNA in Humulus scandens, a dioecious plant with XX/XY1Y2 chromosomes

GJ Zhang, KL Jia, J Wang, WJ Gao, SF Li - Frontiers in Plant Science, 2023 - frontiersin.org
Transposable elements (TEs) and satellite DNAs, two major categories of repetitive
sequences, are expected to accumulate in non-recombining genome regions, including sex …

[HTML][HTML] Comparative Analysis of Transposable Elements in the Genomes of Citrus and Citrus-Related Genera

Y Wu, F Wang, K Lyu, R Liu - Plants, 2024 - mdpi.com
Transposable elements (TEs) significantly contribute to the evolution and diversity of plant
genomes. In this study, we explored the roles of TEs in the genomes of Citrus and Citrus …

Genome sequencing of 'Fuji'apple clonal varieties reveals genetic mechanism of the spur-type morphology

Y Cai, X Gao, J Mao, Y Liu, L Tong, X Chen… - Nature …, 2024 - nature.com
Somatic variations can give rise to bud sports with advantageous traits, serving as the
foundation for bud sport breeding in perennial plants. Here, we report a fully phased …