Walking a tightrope: the complex balancing act of R-loops in genome stability

JR Brickner, JL Garzon, KA Cimprich - Molecular cell, 2022 - cell.com
Although transcription is an essential cellular process, it is paradoxically also a well-
recognized cause of genomic instability. R-loops, non-B DNA structures formed when …

RNA biogenesis and RNA metabolism factors as R-loop suppressors: a hidden role in genome integrity

R Luna, B Gómez-González… - Genes & …, 2024 - genesdev.cshlp.org
Genome integrity relies on the accuracy of DNA metabolism, but as appreciated for more
than four decades, transcription enhances mutation and recombination frequencies. More …

PARP1 associates with R-loops to promote their resolution and genome stability

N Laspata, P Kaur, SY Mersaoui, D Muoio… - Nucleic acids …, 2023 - academic.oup.com
PARP1 is a DNA-dependent ADP-Ribose transferase with ADP-ribosylation activity that is
triggered by DNA breaks and non-B DNA structures to mediate their resolution. PARP1 was …

Direct visualization of transcription-replication conflicts reveals post-replicative DNA: RNA hybrids

H Stoy, K Zwicky, D Kuster, KS Lang… - Nature Structural & …, 2023 - nature.com
Transcription-replication collisions (TRCs) are crucial determinants of genome instability. R-
loops were linked to head-on TRCs and proposed to obstruct replication fork progression …

Human senataxin is a bona fide R-loop resolving enzyme and transcription termination factor

Z Hasanova, V Klapstova, O Porrua, R Stefl… - Nucleic Acids …, 2023 - academic.oup.com
Prolonged pausing of the transcription machinery may lead to the formation of three-
stranded nucleic acid structures, called R-loops, typically resulting from the annealing of the …

A R-loop sensing pathway mediates the relocation of transcribed genes to nuclear pore complexes

A Penzo, M Dubarry, C Brocas, M Zheng… - Nature …, 2023 - nature.com
Nuclear pore complexes (NPCs) have increasingly recognized interactions with the
genome, as exemplified in yeast, where they bind transcribed or damaged chromatin. By …

Elongating RNA polymerase II and RNA: DNA hybrids hinder fork progression and gene expression at sites of head-on replication-transcription collisions

L Zardoni, E Nardini, A Brambati, C Lucca… - Nucleic Acids …, 2021 - academic.oup.com
Uncoordinated clashes between replication forks and transcription cause replication stress
and genome instability, which are hallmarks of cancer and neurodegeneration. Here, we …

Senataxin RNA/DNA helicase promotes replication restart at co-transcriptional R-loops to prevent MUS81-dependent fork degradation

S Rao, M Andrs, K Shukla, E Isik, C König… - Nucleic Acids …, 2024 - academic.oup.com
Replication forks stalled at co-transcriptional R-loops can be restarted by a mechanism
involving fork cleavage-religation cycles mediated by MUS81 endonuclease and DNA …

Transcription stress at telomeres leads to cytosolic DNA release and paracrine senescence

A Siametis, K Stratigi, D Giamaki… - Nature …, 2024 - nature.com
Transcription stress has been linked to DNA damage-driven aging, yet the underlying
mechanism remains unclear. Here, we demonstrate that Tcea1−/− cells, which harbor a …

DNA-RNA hybrids at DSBs interfere with repair by homologous recombination

P Ortega, JA Mérida-Cerro, AG Rondón… - Elife, 2021 - elifesciences.org
DNA double-strand breaks (DSBs) are the most harmful DNA lesions and their repair is
crucial for cell viability and genome integrity. The readout of DSB repair may depend on …