[HTML][HTML] On structural and practical identifiability

FG Wieland, AL Hauber, M Rosenblatt… - Current Opinion in …, 2021 - Elsevier
We discuss issues of structural and practical identifiability of partially observed differential
equations which are often applied in systems biology. The development of mathematical …

Identifiability analysis for stochastic differential equation models in systems biology

AP Browning, DJ Warne, K Burrage… - Journal of the …, 2020 - royalsocietypublishing.org
Mathematical models are routinely calibrated to experimental data, with goals ranging from
building predictive models to quantifying parameters that cannot be measured. Whether or …

Parameter identifiability and model selection for sigmoid population growth models

MJ Simpson, AP Browning, DJ Warne… - Journal of theoretical …, 2022 - Elsevier
Sigmoid growth models, such as the logistic, Gompertz and Richards' models, are widely
used to study population dynamics ranging from microscopic populations of cancer cells, to …

Implementing measurement error models with mechanistic mathematical models in a likelihood-based framework for estimation, identifiability analysis and prediction …

RJ Murphy, OJ Maclaren… - Journal of the Royal …, 2024 - royalsocietypublishing.org
Throughout the life sciences, we routinely seek to interpret measurements and observations
using parametrized mechanistic mathematical models. A fundamental and often overlooked …

Designing and interpreting 4D tumour spheroid experiments

RJ Murphy, AP Browning, G Gunasingh… - Communications …, 2022 - nature.com
Tumour spheroid experiments are routinely used to study cancer progression and treatment.
Various and inconsistent experimental designs are used, leading to challenges in …

[HTML][HTML] Modelling count data with partial differential equation models in biology

MJ Simpson, RJ Murphy, OJ Maclaren - Journal of Theoretical Biology, 2024 - Elsevier
Partial differential equation (PDE) models are often used to study biological phenomena
involving movement-birth–death processes, including ecological population dynamics and …

Quantitative analysis of tumour spheroid structure

AP Browning, JA Sharp, RJ Murphy, G Gunasingh… - Elife, 2021 - elifesciences.org
Tumour spheroids are common in vitro experimental models of avascular tumour growth.
Compared with traditional two-dimensional culture, tumour spheroids more closely mimic …

A stochastic mathematical model of 4D tumour spheroids with real-time fluorescent cell cycle labelling

JJ Klowss, AP Browning, RJ Murphy… - Journal of the …, 2022 - royalsocietypublishing.org
In vitro tumour spheroids have been used to study avascular tumour growth and drug design
for over 50 years. Tumour spheroids exhibit heterogeneity within the growing population that …

Profile-wise analysis: a profile likelihood-based workflow for identifiability analysis, estimation, and prediction with mechanistic mathematical models

MJ Simpson, OJ Maclaren - PLoS Computational Biology, 2023 - journals.plos.org
Interpreting data using mechanistic mathematical models provides a foundation for
discovery and decision-making in all areas of science and engineering. Developing …

Practical identifiability of parametrised models: A review of benefits and limitations of various approaches

NN Lam, PD Docherty, R Murray - Mathematics and Computers in …, 2022 - Elsevier
This systematic review of practical identifiability (PI) explores the challenging issue of how
parameter identification of models is affected by both experimental considerations and …