The shape of things to come: Topological data analysis and biology, from molecules to organisms

EJ Amézquita, MY Quigley, T Ophelders… - Developmental …, 2020 - Wiley Online Library
Shape is data and data is shape. Biologists are accustomed to thinking about how the shape
of biomolecules, cells, tissues, and organisms arise from the effects of genetics …

In-vitro grafting–Current applications and future prospects

L Chilukamarri, S Ashrafzadeh, DWM Leung - Scientia Horticulturae, 2021 - Elsevier
In-vitro grafting involves grafting a micro-scion onto a micro-rootstock under aseptic
conditions. Due to juvenility and health status of the source plants for microscion …

Shading effects in agrivoltaic systems can make the difference in boosting food security in climate change

T Semeraro, A Scarano, LM Curci, A Leggieri… - Applied Energy, 2024 - Elsevier
Photovoltaic (PV) systems play an important role in the sustainable energy transition, but
their impact on food security is ambiguous due to the shift in land use from agriculture to …

Grafting Watermelon Onto Pumpkin Increases Chilling Tolerance by Up Regulating Arginine Decarboxylase to Increase Putrescine Biosynthesis

J Lu, F Cheng, Y Huang, Z Bie - Frontiers in Plant Science, 2022 - frontiersin.org
Low temperature is a major environmental factor that severely impairs plant growth and
productivity. Watermelon (Citrullus lanatus) is a chilling-sensitive crop. Grafting of …

Grapevine bacterial communities display compartment-specific dynamics over space and time within the Central Valley of California

JF Swift, Z Migicovsky, GE Trello, AJ Miller - Environmental Microbiome, 2023 - Springer
Background Plant organs (compartments) host distinct microbiota which shift in response to
variation in both development and climate. Grapevines are woody perennial crops that are …

Region, vintage, and grape maturity co-shaped the ionomic signatures of the Cabernet Sauvignon wines

X Han, HC Lu, Y Wang, XT Gao, HQ Li, MB Tian… - Food Research …, 2023 - Elsevier
The ionic elements in wine and in vineyards are gaining attention due to characterization of
the wine traits, wine origin tracing, and vine nutrient judging. In this experiment, 19 elements …

Grapevine microbiota reflect diversity among compartments and complex interactions within and among root and shoot systems

JF Swift, ME Hall, ZN Harris, MT Kwasniewski, AJ Miller - Microorganisms, 2021 - mdpi.com
Grafting connects root and shoot systems of distinct individuals, bringing microbial
communities of different genotypes together in a single plant. How do root system and shoot …

Grapevine scion gene expression is driven by rootstock and environment interaction

ZN Harris, JE Pratt, LG Kovacs, LL Klein… - BMC plant biology, 2023 - Springer
Background Grafting is a horticultural practice used widely across woody perennial crop
species to fuse together the root and shoot system of two distinct genotypes, the rootstock …

Multi-dimensional leaf phenotypes reflect root system genotype in grafted grapevine over the growing season

ZN Harris, M Awale, N Bhakta, DH Chitwood… - …, 2021 - academic.oup.com
Background Modern biological approaches generate volumes of multi-dimensional data,
offering unprecedented opportunities to address biological questions previously beyond …

Grapevine rootstocks affect growth‐related scion phenotypes

Z Migicovsky, P Cousins, LM Jordan, S Myles… - Plant …, 2021 - Wiley Online Library
Grape growers use rootstocks to provide protection against pests and pathogens and to
modulate viticulture performance such as shoot growth. Our study examined two grapevine …