ddX: Polarizable continuum solvation from small molecules to proteins

M Nottoli, MF Herbst, A Mikhalev, A Jha… - Wiley …, 2024 - Wiley Online Library
Polarizable continuum solvation models are popular in both, quantum chemistry and in
biophysics, though typically with different requirements for the numerical methods. However …

Domain decomposition method for Poisson--Boltzmann equations based on Solvent Excluded Surface

A Jha, B Stamm - arXiv preprint arXiv:2309.06862, 2023 - arxiv.org
In this paper, we develop a domain-decomposition method for the generalized Poisson-
Boltzmann equation based on a solvent-excluded surface which is widely used in …

Coupled cluster theory on modern heterogeneous supercomputers

HH Corzo, AE Hillers-Bendtsen, A Barnes… - Frontiers in …, 2023 - frontiersin.org
This study examines the computational challenges in elucidating intricate chemical systems,
particularly through ab-initio methodologies. This work highlights the Divide-Expand …

Some Challenges of Diffused Interfaces in Implicit‐Solvent Models

M Guerrero‐Montero, M Bosy… - Journal of …, 2025 - Wiley Online Library
ABSTRACT The standard Poisson‐Boltzmann (PB) model for molecular electrostatics
assumes a sharp variation of the permittivity and salt concentration along the solute‐solvent …

Solution Decomposition for the Nonlinear Poisson–Boltzmann Equation Using the Range-Separated Tensor Format

C Kweyu, V Khoromskaia, BN Khoromskij, M Stein… - SIAM Journal on …, 2025 - SIAM
The Poisson–Boltzmann equation (PBE) is an implicit solvent continuum model for
calculating the electrostatic potential and energies of charged biomolecules in ionic …

An Investigation of Physics Informed Neural Networks to solve the Poisson-Boltzmann Equation in Molecular Electrostatics

MA Achondo, JH Chaudhry, CD Cooper - arXiv preprint arXiv:2410.12810, 2024 - arxiv.org
Physics-informed neural networks (PINN) is a machine learning (ML)-based method to solve
partial differential equations that has gained great popularity due to the fast development of …

Corrigendum: Coupled cluster theory on modern heterogeneous supercomputers

HH Corzo, AE Hillers-Bendtsen, A Barnes… - Frontiers in …, 2023 - frontiersin.org
In the published article, the bibliography file was corrupted. As a consequence there were
several inconsistencies within the citation list: titles did not match author lists or journal name …