Fundamentals of microbial community resistance and resilience

A Shade, H Peter, SD Allison, DL Baho… - Frontiers in …, 2012 - frontiersin.org
Microbial communities are at the heart of all ecosystems, and yet microbial community
behavior in disturbed environments remains difficult to measure and predict. Understanding …

Applications of next generation sequencing in molecular ecology of non-model organisms

R Ekblom, J Galindo - Heredity, 2011 - nature.com
As most biologists are probably aware, technological advances in molecular biology during
the last few years have opened up possibilities to rapidly generate large-scale sequencing …

Applying the core microbiome to understand host–microbe systems

A Risely - Journal of Animal Ecology, 2020 - Wiley Online Library
The host‐associated core microbiome was originally coined to refer to common groups of
microbes or genes that were likely to be particularly important for host biological function …

Quantifying community assembly processes and identifying features that impose them

JC Stegen, X Lin, JK Fredrickson, X Chen… - The ISME …, 2013 - academic.oup.com
Spatial turnover in the composition of biological communities is governed by (ecological)
Drift, Selection and Dispersal. Commonly applied statistical tools cannot quantitatively …

Stochastic and deterministic assembly processes in subsurface microbial communities

JC Stegen, X Lin, AE Konopka… - The ISME journal, 2012 - academic.oup.com
A major goal of microbial community ecology is to understand the forces that structure
community composition. Deterministic selection by specific environmental factors is …

Transitions in bacterial communities along the 2000 km salinity gradient of the Baltic Sea

DPR Herlemann, M Labrenz, K Jürgens… - The ISME …, 2011 - academic.oup.com
Salinity is a major factor controlling the distribution of biota in aquatic systems, and most
aquatic multicellular organisms are either adapted to life in saltwater or freshwater …

The Plastisphere – Uncovering tightly attached plastic “specific” microorganisms

IV Kirstein, A Wichels, E Gullans, G Krohne, G Gerdts - PLoS One, 2019 - journals.plos.org
In order to understand the degradation potential of plastics in the marine environment,
microorganisms that preferentially colonize and interact with plastic surfaces, as opposed to …

Phylogenetic beta diversity in bacterial assemblages across ecosystems: deterministic versus stochastic processes

J Wang, JI Shen, Y Wu, C Tu, J Soininen… - The ISME …, 2013 - academic.oup.com
Increasing evidence has emerged for non-random spatial distributions of microbes, but
knowledge of the processes that cause variation in microbial assemblage among …

A guide to the natural history of freshwater lake bacteria

RJ Newton, SE Jones, A Eiler… - Microbiology and …, 2011 - Am Soc Microbiol
Freshwater bacteria are at the hub of biogeochemical cycles and control water quality in
lakes. Despite this, little is known about the identity and ecology of functionally significant …

Microbial community composition and diversity via 16S rRNA gene amplicons: evaluating the illumina platform

L Sinclair, OA Osman, S Bertilsson, A Eiler - PloS one, 2015 - journals.plos.org
As new sequencing technologies become cheaper and older ones disappear, laboratories
switch vendors and platforms. Validating the new setups is a crucial part of conducting …