Isochores and the evolutionary genomics of vertebrates

G Bernardi - Gene, 2000 - Elsevier
The nuclear genomes of vertebrates are mosaics of isochores, very long stretches (≫
300kb) of DNA that are homogeneous in base composition and are compositionally …

The evolution of isochores

A Eyre-Walker, LD Hurst - Nature Reviews Genetics, 2001 - nature.com
One of the most striking features of mammalian chromosomes is the variation in G+ C
content that occurs over scales of hundreds of kilobases to megabases, the so …

[HTML][HTML] Sequencing of the sea lamprey (Petromyzon marinus) genome provides insights into vertebrate evolution

JJ Smith, S Kuraku, C Holt, T Sauka-Spengler… - Nature …, 2013 - nature.com
Lampreys are representatives of an ancient vertebrate lineage that diverged from our own∼
500 million years ago. By virtue of this deeply shared ancestry, the sea lamprey (P. marinus) …

Synonymous mutations in the human dopamine receptor D2 (DRD2) affect mRNA stability and synthesis of the receptor

J Duan, MS Wainwright, JM Comeron… - Human molecular …, 2003 - academic.oup.com
Although changes in nucleotide sequence affecting the composition and the structure of
proteins are well known, functional changes resulting from nucleotide substitutions cannot …

Local rates of recombination are positively correlated with GC content in the human genome

SM Fullerton, A Bernardo Carvalho… - Molecular biology and …, 2001 - academic.oup.com
The GC content of human DNA varies widely across the genome, ranging from 30% to 60%,
and regions of hundreds of kilobases (often referred to as isochores [Bernardi 2000]) may …

Integrating genomics, bioinformatics, and classical genetics to study the effects of recombination on genome evolution

JA Birdsell - Molecular biology and evolution, 2002 - academic.oup.com
This study presents compelling evidence that recombination significantly increases the silent
GC content of a genome in a selectively neutral manner, resulting in a highly significant …

Time scale for cyclostome evolution inferred with a phylogenetic diagnosis of hagfish and lamprey cDNA sequences

S Kuraku, S Kuratani - Zoological science, 2006 - BioOne
The Cyclostomata consists of the two orders Myxiniformes (hagfishes) and
Petromyzoniformes (lampreys), and its monophyly has been unequivocally supported by …

High guanine–cytosine content is not an adaptation to high temperature: a comparative analysis amongst prokaryotes

LD Hurst, AR Merchant - … of the Royal Society of London …, 2001 - royalsocietypublishing.org
The causes of the variation between genomes in their guanine (G) and cytosine (C) content
is one of the central issues in evolutionary genomics. The thermal adaptation hypothesis …

The study of correlation structures of DNA sequences: a critical review

W Li - Computers & chemistry, 1997 - Elsevier
The study of correlation structure in the primary sequences of DNA is reviewed. The issues
reviewed include: symmetries among 16 base-base correlation functions; accurate …

GC3 biology in corn, rice, sorghum and other grasses

TV Tatarinova, NN Alexandrov, JB Bouck… - BMC genomics, 2010 - Springer
Background The third, or wobble, position in a codon provides a high degree of possible
degeneracy and is an elegant fault-tolerance mechanism. Nucleotide biases between …