Mass spectrometry-based protein footprinting for higher-order structure analysis: fundamentals and applications

XR Liu, MM Zhang, ML Gross - Chemical reviews, 2020 - ACS Publications
Proteins adopt different higher-order structures (HOS) to enable their unique biological
functions. Understanding the complexities of protein higher-order structures and dynamics …

Advances in hydrogen/deuterium exchange mass spectrometry and the pursuit of challenging biological systems

EI James, TA Murphree, C Vorauer, JR Engen… - Chemical …, 2021 - ACS Publications
Solution-phase hydrogen/deuterium exchange (HDX) coupled to mass spectrometry (MS) is
a widespread tool for structural analysis across academia and the biopharmaceutical …

Unraveling the mechanism of electrospray ionization

L Konermann, E Ahadi, AD Rodriguez, S Vahidi - 2013 - ACS Publications
Electrospray ionization (ESI) generates intact gas-phase ions from analytes in solution for
mass spectrometric investigations. ESI can proceed via different mechanisms. Low …

Folding correctors can restore CFTR posttranslational folding landscape by allosteric domain–domain coupling

N Soya, H Xu, A Roldan, Z Yang, H Ye, F Jiang… - Nature …, 2023 - nature.com
The folding/misfolding and pharmacological rescue of multidomain ATP-binding cassette
(ABC) C-subfamily transporters, essential for organismal health, remain incompletely …

Rpn1 provides adjacent receptor sites for substrate binding and deubiquitination by the proteasome

Y Shi, X Chen, S Elsasser, BB Stocks, G Tian, BH Lee… - Science, 2016 - science.org
INTRODUCTION The ubiquitin-proteasome system comprises hundreds of distinct pathways
of degradation, which converge at the step of ubiquitin recognition by the proteasome. Five …

Native ion mobility-mass spectrometry and related methods in structural biology

A Konijnenberg, A Butterer, F Sobott - Biochimica et Biophysica Acta (BBA) …, 2013 - Elsevier
Mass spectrometry-based methods have become increasingly important in structural biology—
in particular for large and dynamic, even heterogeneous assemblies of biomolecules. Native …

How sugars protect dry protein structure

JA Brom, RG Petrikis, GJ Pielak - Biochemistry, 2023 - ACS Publications
Extremotolerant organisms and industry exploit sugars as desiccation protectants, with
trehalose being widely used by both. How sugars, in general, and the hydrolytically stable …

NMR approaches for structural analysis of multidomain proteins and complexes in solution

C Göbl, T Madl, B Simon, M Sattler - Progress in Nuclear Magnetic …, 2014 - Elsevier
NMR spectroscopy is a key method for studying the structure and dynamics of (large)
multidomain proteins and complexes in solution. It plays a unique role in integrated …

Bridging protein structure, dynamics, and function using hydrogen/deuterium‐exchange mass spectrometry

EA Hodge, MA Benhaim, KK Lee - Protein Science, 2020 - Wiley Online Library
Much of our understanding of protein structure and mechanistic function has been derived
from static high‐resolution structures. As structural biology has continued to evolve it has …

Target identification of natural and traditional medicines with quantitative chemical proteomics approaches

J Wang, L Gao, YM Lee, KA Kalesh, YS Ong… - Pharmacology & …, 2016 - Elsevier
Natural and traditional medicines, being a great source of drugs and drug leads, have
regained wide interests due to the limited success of high-throughput screening of …