T Majerová, J Konvalinka - Molecular aspects of medicine, 2022 - Elsevier
Some medically important viruses―including retroviruses, flaviviruses, coronaviruses, and herpesviruses―code for a protease, which is indispensable for viral maturation and …
F Musarrat, V Chouljenko, A Dahal… - Journal of medical …, 2020 - Wiley Online Library
Severe acute respiratory syndrome coronavirus‐2 (SARS CoV‐2) is the causative agent of the coronavirus disease‐2019 (COVID‐19) pandemic. Coronaviruses enter cells via fusion …
IT Weber, J Agniswamy - Viruses, 2009 - pmc.ncbi.nlm.nih.gov
Antiviral inhibitors of HIV-1 protease are a notable success of structure-based drug design and have dramatically improved AIDS therapy. Analysis of the structures and activities of …
JM Flynn, QYJ Huang, SN Zvornicanin… - ACS infectious …, 2023 - ACS Publications
Drugs that target the main protease (Mpro) of SARS-CoV-2 are effective therapeutics that have entered clinical use. Wide-scale use of these drugs will apply selection pressure for the …
J Fanfrlik, AK Bronowska, J Rezac… - The Journal of …, 2010 - ACS Publications
In this study, we introduce a fast and reliable rescoring scheme for docked complexes based on a semiempirical quantum mechanical PM6-DH2 method. The method utilizes a PM6 …
J Pokorná, L Machala, P Řezáčová, J Konvalinka - Viruses, 2009 - mdpi.com
The design, development and clinical success of HIV protease inhibitors represent one of the most remarkable achievements of molecular medicine. This review describes all nine …
Although many protein variants have properties similar to their corresponding wild-type structures, the replacement of a single amino acid often produces dramatic changes in …
A significant number of antiviral agents used in clinical practice are amino acids, short peptides, or peptidomimetics. Among them, several HIV protease inhibitors (eg lopinavir …
J Agniswamy, CH Shen, A Aniana, JM Sayer… - Biochemistry, 2012 - ACS Publications
The escape mutant of HIV-1 protease (PR) containing 20 mutations (PR20) undergoes efficient polyprotein processing even in the presence of clinical protease inhibitors (PIs) …