Recent advances in deep learning models: a systematic literature review

R Malhotra, P Singh - Multimedia Tools and Applications, 2023 - Springer
In recent years, deep learning has evolved as a rapidly growing and stimulating field of
machine learning and has redefined state-of-the-art performances in a variety of …

EmbedTrack—Simultaneous cell segmentation and tracking through learning offsets and clustering bandwidths

K Löffler, R Mikut - IEEE Access, 2022 - ieeexplore.ieee.org
To shed light on the processes driving cell migration, a systematic analysis of the cell
behavior is required. Since the manual analysis of hundreds or even thousands of cells is …

Graph neural network for cell tracking in microscopy videos

T Ben-Haim, TR Raviv - European Conference on Computer Vision, 2022 - Springer
We present a novel graph neural network (GNN) approach for cell tracking in high-
throughput microscopy videos. By modeling the entire time-lapse sequence as a direct …

TractGeoNet: A geometric deep learning framework for pointwise analysis of tract microstructure to predict language assessment performance

Y Chen, LR Zekelman, C Zhang, T Xue, Y Song… - Medical Image …, 2024 - Elsevier
We propose a geometric deep-learning-based framework, TractGeoNet, for performing
regression using diffusion magnetic resonance imaging (dMRI) tractography and associated …

A compound loss function with shape aware weight map for microscopy cell segmentation

Y Zhu, X Yin, E Meijering - IEEE Transactions on Medical …, 2022 - ieeexplore.ieee.org
Microscopy cell segmentation is a crucial step in biological image analysis and a
challenging task. In recent years, deep learning has been widely used to tackle this task …

DistNet2D: Leveraging long-range temporal information for efficient segmentation and tracking

J Ollion, M Maliet, C Giuglaris, É Vacher, M Deforet - PRX Life, 2024 - APS
Extracting long tracks and lineages from videomicroscopy requires an extremely low error
rate, which is challenging on complex data sets of dense or deforming cells. Leveraging …

Optical microscopic imaging, manipulation, and analysis methods for morphogenesis research

TA Katoh, YT Fukai, T Ishibashi - Microscopy, 2024 - academic.oup.com
Morphogenesis is a developmental process of organisms being shaped through complex
and cooperative cellular movements. To understand the interplay between genetic programs …

Cell image instance segmentation based on PolarMask using weak labels

B Tong, T Wen, Y Du, T Pan - Computer Methods and Programs in …, 2023 - Elsevier
Purpose A PolarMask-based method for blood cell contour segmentation is proposed. The
method is divided into two parts. One part is a weak label-based model pretraining method …

Tracking bacteria at high density with FAST, the Feature-Assisted Segmenter/Tracker

OJ Meacock, WM Durham - PLOS Computational Biology, 2023 - journals.plos.org
Most bacteria live attached to surfaces in densely-packed communities. While new
experimental and imaging techniques are beginning to provide a window on the complex …

Extracellular Vesicle-Based Coatings Enhance Bioactivity of Titanium Implants—SurfEV

TN Pansani, TH Phan, Q Lei, A Kondyurin, B Kalionis… - Nanomaterials, 2021 - mdpi.com
Extracellular vesicles (EVs) are nanoparticles released by cells that contain a multitude of
biomolecules, which act synergistically to signal multiple cell types. EVs are ideal …